Query= MSMg01no423_c01.b1 MSMg01no423_c01.b1 CHROMAT_FILE:
MSMg01no423_c01.b1 PHD_FILE: MSMg01no423_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:44 2005
(461 letters)
>mm_chr3_53632308_53633168
Length = 861
Score = 861 bits (445), Expect = 0.0
Identities = 457/461 (99%)
Strand = Plus / Minus
Query: 1 aaggtaagacatcttggatcctgtggttcacaagacccactccagaacctggacttgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaggtaagacatcttggatcctgtggttcacaagacccactccagaacctggacttgttg 602
Query: 61 tagaaccctccttattttgtcacctgctcagatgtagaagccttccaatgaataaccgag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cagaaccctccttattttgtcacctgctcagatgtagaagccttccaatgaataaccgag 542
Query: 121 tcaatgggggtcacattcatgtattcttcccaggattcaatggggctcatcaagcattac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcaatgggggtcacattcatgtattcttcccaggattcaatggggctcatcaagcattac 482
Query: 181 accgtgcacatgaaggtagcttgtaaaggtgtaataacttgatgttttacttaatagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 accgtgcacatgaaggtagcttgtaaaggtgtaataacttgatgttttacttaatagaat 422
Query: 241 tatggtaaatgttttataccacatggactgcactaaaggctcaaaactgtggactcttct 300
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatggtaaatgccttagaccacatggactgcactaaaggctcaaaactgtggactcttct 362
Query: 301 ttagaaatgtcattggggtattagctgtaatttcatatgcagaaaaaaatccctgccctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttagaaatgtcattggggtattagctgtaatttcatatgcagaaaaaaatccctgccctt 302
Query: 361 tgtgataagcatgtcttatcaagtcctcaagggtatttacttcagtctttctcttgagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtgataagcatgtcttatcaagtcctcaagggtatttacttcagtctttctcttgagtc 242
Query: 421 taatagccaggctggtgctaactagcagagcatcatgctgt 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taatagccaggctggtgctaactagcagagcatcatgctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_c01.g1 MSMg01no423_c01.g1 CHROMAT_FILE:
MSMg01no423_c01.g1 PHD_FILE: MSMg01no423_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:44 2005
(496 letters)
>mm_chr3_53500048_53500942
Length = 895
Score = 905 bits (468), Expect = 0.0
Identities = 489/496 (98%), Gaps = 1/496 (0%)
Strand = Plus / Plus
Query: 1 agatgacctcaaacaattgaggcaggttcatttcatgccggagaggcgacatctctagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgacctcaaacaattgaggcaggttcatttcatgccggagaggcgacatctctagtc 260
Query: 61 tggccactgatcagggacaggacccaatagcttgacgaacacagttcgtggaagtctgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggccactgatcagggacaggacccaatagcttgacgaacacagttcgtggaagtctgtg 320
Query: 121 gcttttcgtagcccaggattgagatgggaatccttaggggccgaatgaggaagtgagctg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttttcatagcccaggattgagatgggaatccttaggggccgaatgaggaagtgagctg 380
Query: 181 ctttccttagaccagcattggctgcctttttctgagaccagtcagtgtctgggatccagg 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ctttccttagaccagcattggctgcctttttccgagaccagtcagtgtctgggatccagg 440
Query: 241 tagttgcttttttctgcaagccctggagagctggcttcctgggactttgagctgggtttc 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 cagctgcttttttctgcaagccctggagagctggcttcctgggactttgagctgggtt-c 499
Query: 301 agggccttggctttggcaagatggggatgggtgggattttctttttcagccatagtggag 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 agggccttggctttggcaagatgggggtgggtgggattttctttttcagccatagtggag 559
Query: 361 gactggaggcttctgagggatgaagacggagtcagtgatggatagcattgattatctact 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 gactggaggcttctgagggatgaagacggagtcagtgatggatagcactgattatctact 619
Query: 421 tgttaggatctcaaatcatctaggaagagagacctctgagtatgactgtgaagaagctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgttaggatctcaaatcatctaggaagagagacctctgagtatgactgtgaagaagctcc 679
Query: 481 tagagcggactccttg 496
||||||||||||||||
Sbjct: 680 tagagcggactccttg 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space: 430110
Effective search space used: 430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
