Query= MSMg01no423_e06.b1 MSMg01no423_e06.b1 CHROMAT_FILE:
MSMg01no423_e06.b1 PHD_FILE: MSMg01no423_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:54 2005
(526 letters)
>mm_chr3_49689018_49689943
Length = 926
Score = 961 bits (497), Expect = 0.0
Identities = 515/521 (98%), Gaps = 2/521 (0%)
Strand = Plus / Plus
Query: 7 gaattctttgttca-cttctgagccccatttttaatggggttatttgatttttttggagt 65
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctttgtttagct-ctgagccccatttttaatggggttatttgatttttttggagt 265
Query: 66 ccaccttcttgagttctttatataattttttaaaaagggaaaaaaaaacaaagaaaacat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccaccttcttgagttctttatataattttttaaaaagggaaaaaaaaacaaagaaaacat 325
Query: 126 agcagctcttggtagagttgggcttgtttctaagatgtctatgtcatcttatgtctcagc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agcagctcttggtagagttgggcttgtttctaagatgtctatgtcatcttatgtctcagc 385
Query: 186 agtcacaggacagcagcaacaacttttatatgtgggaactgtgtggtttttctatcgtcc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agtcacaggacagcagcaacaacttttatatgtgggaactgtgtggtttttctatcgtcc 445
Query: 246 tagaacataaggacagagtcttgttcaatatttttggcaggtgctttctttggcttttag 305
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 446 tagaacataaggacagagtcttgttcaatagtcttggcaggtgctttctttggcttttag 505
Query: 306 gaatatgacttcatttgatggatatatttttagttccccctgggaagttgcaaagtggaa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaatatgacttcatttgatggatatatttttagttccccctgggaagttgcaaagtggaa 565
Query: 366 ttactttcttgtcttcctatttgttatttttatggcaggtccttagctatagatacatgt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttactttcttgtcttcctatttgttatttttatggcaggtccttagctatagatacatgt 625
Query: 426 ttgcctgggataaatagccctgccagagtagcatgacattatgcagttagcactgagagt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttgcctgggataaatagccctgccagagtagcatgacattatgcagttagcactgagagt 685
Query: 486 tttttcttttttagcactgatctttgtatgggctgaaaaga 526
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 686 tttttcttttttagcactgatctttgtatggtctgaaaaga 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_e06.g1 MSMg01no423_e06.g1 CHROMAT_FILE:
MSMg01no423_e06.g1 PHD_FILE: MSMg01no423_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:54 2005
(543 letters)
>mm_chr3_49863601_49864543
Length = 943
Score = 1044 bits (540), Expect = 0.0
Identities = 542/543 (99%)
Strand = Plus / Minus
Query: 1 caggacagccagggctatacagagaaaccctttctcgaaaaacaaaacaaataaacaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 caggacagccagggctatacagagaaaccctttctcgaaaaacaaaacaaataaacaaaa 683
Query: 61 caaaacaaaaaagaaatgtaaataaattaaaaaaacaataaaaagtgataaaaaatgaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caaaacaaaaaagaaatgtaaataaattaaaaaaacaataaaaagtgataaaaaatgaag 623
Query: 121 atactagaaaaaaaagtctttgatatctaaatttatccttaatcttcagatgtgattaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atactagaaaaaaaagtctttgatatctaaatttatccttaatcttcagatgtgattaca 563
Query: 181 atcctgacttcacctgatttatcaagcacagtatttatctgtgtcaacaatggtttgact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atcctgacttcacctgatttatcaagcacagtatttatctgtgtcaacaatggtttgact 503
Query: 241 gcaaacaggagtgctcagaaaggttgctgtataatgtcttaacaaaaactatcctgcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcaaacaggagtgctcagaaaggttgctgtataatgtcttaacaaaaactatcctgcaga 443
Query: 301 gcatggtaaattgatctgaaatcagtaattctatatacatactgaactttcatttttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcatggtaaattgatctgaaatcagtaattctatatacatactgaactttcatttttaaa 383
Query: 361 atgaagcatgtacaaacactcagcctttctttttctttctttttttttttttctttccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atgaagcatgtacaaacactcagcctttctttttctttctttttttttttttctttccat 323
Query: 421 tttttattaggtatttagctcatttacatttccaatgctataccaaaagtcccccatacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttttattaggtatttagctcatttacatttccaatgctataccaaaagtcccccatacc 263
Query: 481 cacccacccccactcccctacccgcccactccccctttttgnccctggcgttcccctgtt 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 262 cacccacccccactcccctacccgcccactccccctttttggccctggcgttcccctgtt 203
Query: 541 ctg 543
|||
Sbjct: 202 ctg 200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
