BAC Information

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BAC

Clone NameMSMg01-423F04
Chromosome3 (Build37)
Map Location 18,934,327 - 18,934,820
singlet/doubletsinglet
Overlap genenone
Upstream geneBhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423F04.T7 (MSMg01no423_f04.b1)MSMg01-423F04.TJ (MSMg01no423_f04.g1)
ACCAG517506AG517507
length724745
length of high quality
(start - end)
505 (59 - 563)---
definitionCHROMAT_FILE: MSMg01no423_f04.b1 PHD_FILE: MSMg01no423_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:59 2005CHROMAT_FILE: MSMg01no423_f04.g1 PHD_FILE: MSMg01no423_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GGTATGCTGCTCCACCTACCTGGCCCTTATGTGGACTCTGAGCATCCCAG
CTCCTATCCTCATGCTTCCACGTGCTCTAACCATGGAGAAAGCACCTCAG
CCAGGTCTTAAGGACATTTTAGATCTCATCTTGAAGGATAATCTTCACAA
TGAAAGAATTTCCTATTACCCCAAGAGATTTATTCCTTGAAACATGAAGC
CAATTCCTTTGTAAGATATATGTGGTATATGACCCACAAGGACCTTCACT
TCACCTCTAAGACACTCATATCCAAATGACAGCTTCATATCGACCTCAGC
TTGACCCTTTAGCAAGCCTGAAATCAGCCAAGTGCTTCTCACACTGTCAC
TTGAAAATGTTCAGTGTCCCAATGTTCTTACACACAAACACTTACAGAGT
CATTTCTCAAATGACAGGACAGAGAGGAGTTTCTGGGTCTCTGGAAGATT
AGGTGAGGACGAGCATGGTCTGGAGTCTCTCCTGCGAATCCCCTGAGGGA
GCGGCAGTATGTTGTCCTGTGCTCTAGNAGCGAGAAGTGCTGCCCATGGT
CATGAAGAGAAAGTTGAAATCCCGAACCCTTGCTAAGAATTGTCCTCAGT
TGGTTGACCATTTTTCACGTAGTCTAAGCCTCTTCCTTAACTCATTGGTT
TTTTCTTCCTTATGGACCACATAG
TCATTCTTCTTCGAAGGGTCGCCGGCCGCTTTTTNNNCGAAAGCTATGGC
TAGCCTGGAGACCGCCGGCTTCCCCAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAAGACAAGCTTGGATTAGACAGGGAGACCTACACTCAAA
CACATAGCTACAAACATAAATACATATACCCCCCTATTCCCTATGGGATA
CCTATATATATCCTATATGAGCTTTTGCGCCCTATGAAGTAACTAAATAA
TTAATTCCAAATTTTTCTTTTTCTCTTCACTTTAAAAAAAAGTAAATTTA
GGGGGAAAAAAAAAAAAAAAAAAAAAACCTGCGCCCTTGCCTTTTTTTGG
GGGAAAAAAAAATTGGCTTTTTAAAAACCCCCCCCAACATTGTTGGGGAA
GGGCAGAAAATTTAAACGCCCGTATATCTTTCGAGAAATCCCCAGGGGCC
CCTCCCCCCCTTGTTGTTTTTCTCGTAAGAGGGGGTTTTTCCCAACACCT
TGCCNNNNCCTCGCTCACTTCTTTTTTGCCTTTTCCTATACTCGTTTTCC
CCCTCCCTTCTCTTTGTCCCTCCCTTTTTCCTTTCATCGGCCCTCTTCCT
GTTTACCCCTATGTCCTCTTTTTCTTCCCCTTTTTTCTTCGATTTTCTAA
TTCCCCTCTTTTCTATTCCCCCCTCTTTTTTTTCCCCCCTACCCCCTTAT
TTGTCTATCCTCCCTTCACTTCCTTTTTATTCCCCCCCCCTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_f04.b1 MSMg01no423_f04.b1 CHROMAT_FILE:
MSMg01no423_f04.b1 PHD_FILE: MSMg01no423_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:59 2005
         (505 letters)



>mm_chr3_18934127_18935031
          Length = 905

 Score =  857 bits (443), Expect = 0.0
 Identities = 485/505 (96%), Gaps = 11/505 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctccacctacctggcccttatgtggactctgagcatcccagctcctatcctcatgcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctccacctacctggcccttatgtggactctgagcatcccagctcctatcctcatgcttc 260

                                                                       
Query: 61  cacgtgctctaaccatggagaaagcacctcagccaggtcttaaggacattttagatctca 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatgctctaaccatggagaaagcacctcagccaggtcttaaggacattttagatctca 320

                                                                       
Query: 121 tcttgaaggataatcttcacaatgaaagaatttcctattaccccaagagatttattcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgaaggataatcttcacaatgaaagaatttcctattaccccaagagatttattcctt 380

                                                                       
Query: 181 gaaacatgaagccaattcctttgtaagatatatgtggtatatgacccacaaggaccttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 381 gaaacatgaagccaattcctttgtaagatatatgtggtatatgacccacaaggac-ttc- 438

                                                                       
Query: 241 cttcacctctaagacactcatatccaaatgacagcttcatatcgacctcagcttgaccct 300
                    |||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 439 ---------taagacactcatatacaaatgacagcttcatatcgacctcagcttgactct 489

                                                                       
Query: 301 ttagcaagcctgaaatcagccaagtgcttctcacactgtcacttgaaaatgttcagtgtc 360
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 490 ttagcaagcctgaaatcagccaggtgcttctcacactgtcacttgaaaatgttcggtgcc 549

                                                                       
Query: 361 ccaatgttcttacacacaaacacttacagagtcatttctcaaatgacaggacagagagga 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 550 ccaatgttcttacacacaaacacttacagagtcatttctcaagtgacaggacagagagga 609

                                                                       
Query: 421 gtttctgggtctctggaagattaggtgaggacgagcatggtctggagtctctcctgcgaa 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 610 gtttctgggtctctggaagattaggtgaggacgagcacggtctggagtctctcctgcgaa 669

                                    
Query: 481 tcccctgagggagcggcagtatgtt 505
           ||||||||||||| |||||||||||
Sbjct: 670 tcccctgagggagtggcagtatgtt 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)