MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-423F17
Chromosome	3 (Build37)
Map Location	115,739,174 - 115,739,650
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Olfm3, EG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2
Downstream gene	Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749
Link	Open Mouse BAC browser

Click to get alignment info.

name	Olfm3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229759 MGI:2387329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG546808 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546808 MGI:3646101
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Edg1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13609 MGI:1096355
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dph5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69740 MGI:1916990
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC626061 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626061
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 45 ESTs, 4 Proteins pseudo : _no_value

name	Slc30a7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66500 MGI:1913750
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Extl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58193 MGI:1889574
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Vcam1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22329 MGI:98926
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpr88 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64378 MGI:1927653
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdc14a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229776 MGI:2442676
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rtcd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66368 MGI:1913618
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dbt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13171 MGI:105386
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043702 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043702
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 68 ESTs, 10 Proteins

name	LOC100043705 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043705
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 598 ESTs, 2 Proteins

name	Lrrc39 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109245 MGI:1924557
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	A930028L21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229780 MGI:1925219
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sass6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72776 MGI:1920026
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hiat1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15247 MGI:1201609
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc35a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229782 MGI:1917648
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Agl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77559 MGI:1924809
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043710 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043710
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	LOC100043250 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043250
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Frrs1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20321 MGI:108076
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Palmd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114301 MGI:2148896
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668749 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668749 MGI:3643926
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	Olfm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892898 GeneID:229759 MGI:2387329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactomedin 3 transcript_id : NM_153458.2

name	Olfm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892210 GeneID:229759 MGI:2387329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : olfactomedin 3 transcript_id : NM_153157.2

name	Edg1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384665 GeneID:13609 MGI:1096355
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : endothelial differentiation sphingolipid G-protein-coupled receptor 1 transcript_id : NM_007901.4

name	Dph5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254182 GeneID:69740 MGI:1916990
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DPH5 homolog (S. cerevisiae) transcript_id : NM_027193.2

name	Slc30a7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354123 GeneID:66500 MGI:1913750
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 30 (zinc transporter), member 7 transcript_id : NM_023214.4

name	Extl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142356073 GeneID:58193 MGI:1889574
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exotoses (multiple)-like 2 transcript_id : NM_021388.3

name	Vcam1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981429 GeneID:22329 MGI:98926
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : vascular cell adhesion molecule 1 transcript_id : NM_011693.2

name	Gpr88 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:11967952 GeneID:64378 MGI:1927653
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G-protein coupled receptor 88 transcript_id : NM_022427.1

name	Cdc14a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124249116 GeneID:229776 MGI:2442676
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CDC14 cell division cycle 14 homolog A (S. cerevisiae) transcript_id : NM_001080818.1

name	Rtcd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802647 GeneID:66368 MGI:1913618
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA terminal phosphate cyclase domain 1 transcript_id : NM_025517.2

name	Dbt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803124 GeneID:13171 MGI:105386
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dihydrolipoamide branched chain transacylase E2 transcript_id : NM_010022.2

name	LOC100043702 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251456 GeneID:100043702
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 68 ESTs, 10 Proteins product : similar to UBE2D3 transcript_id : XM_001480977.1

name	LOC100043705 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251458 GeneID:100043705
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 598 ESTs, 2 Proteins product : similar to MGC89287 protein transcript_id : XM_001480979.1

name	Lrrc39 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803027 GeneID:109245 MGI:1924557
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 39 transcript_id : NM_175413.2

name	Lrrc39 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371234 GeneID:109245 MGI:1924557
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 39 transcript_id : NM_027321.2

name	A930028L21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802054 GeneID:229780 MGI:1925219
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A930028L21 gene transcript_id : NM_030016.2

name	Sass6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037300 GeneID:72776 MGI:1920026
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spindle assembly 6 homolog (C. elegans) transcript_id : NM_028349.1

name	Hiat1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680220 GeneID:15247 MGI:1201609
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hippocampus abundant gene transcript 1 transcript_id : NM_008246.1

name	Slc35a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130067 GeneID:229782 MGI:1917648
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 transcript_id : NM_144902.3

name	Agl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486746 GeneID:77559 MGI:1924809
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amylo-1,6-glucosidase, 4-alpha-glucanotransferase transcript_id : NM_001081326.1

name	Frrs1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802713 GeneID:20321 MGI:108076
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ferric-chelate reductase 1 transcript_id : NM_009146.2

name	Palmd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89363041 GeneID:114301 MGI:2148896
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : palmdelphin transcript_id : NM_023245.3

name	Olfm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23618873 CCDS:CCDS17779.1 GeneID:229759 MGI:2387329
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform A is encoded by transcript variant A; optimedin product : olfactomedin 3 isoform A protein_id : NP_703188.1

name	Olfm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346605 CCDS:CCDS17780.1 GeneID:229759 MGI:2387329
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform B is encoded by transcript variant B; optimedin product : olfactomedin 3 isoform B protein_id : NP_694797.1

name	Edg1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21687214 CCDS:CCDS17781.1 GeneID:13609 MGI:1096355
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0001619 - lysosphingolipid and lysophosphatidic acid receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IDA]; GO:0007420 - brain development [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007193 - G-protein signaling, adenylate cyclase inhibiting pathway [Evidence IDA]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP]; GO:0030155 - regulation of cell adhesion [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : endothelial differentiation gene 1 product : endothelial differentiation sphingolipid G-protein-coupled receptor 1 protein_id : NP_031927.2

name	Dph5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254183 CCDS:CCDS17782.1 GeneID:69740 MGI:1916990
definition	GO_function : GO:0004164 - diphthine synthase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA]; GO:0017183 - peptidyl-diphthamide biosynthesis from peptidyl-histidine [Evidence IEA] codon_start : 1 product : diphthine synthase protein_id : NP_081469.2

name	Slc30a7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963579 CCDS:CCDS17783.1 GeneID:66500 MGI:1913750
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA] GO_function : GO:0008270 - zinc ion binding [Evidence IC]; GO:0005385 - zinc ion transporter activity [Evidence IDA] GO_process : GO:0006829 - zinc ion transport [Evidence IDA] codon_start : 1 product : zinc transporter like 2 protein_id : NP_075703.1

name	Extl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981138 CCDS:CCDS17784.1 GeneID:58193 MGI:1889574
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0001888 - glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 exception : mismatches in translation product : exotoses (multiple)-like 2 protein_id : NP_067363.2

name	Vcam1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981430 CCDS:CCDS17785.1 GeneID:22329 MGI:98926
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IDA]; GO:0016337 - cell-cell adhesion [Evidence IEA] codon_start : 1 exception : mismatches in translation product : vascular cell adhesion molecule 1 protein_id : NP_035823.2

name	Gpr88 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11967953 GeneID:64378 MGI:1927653
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence ISS] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G-protein coupled receptor 88 protein_id : NP_071872.1

name	Cdc14a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249117 GeneID:229776 MGI:2442676
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA] codon_start : 1 product : CDC14 cell division cycle 14 homolog A protein_id : NP_001074287.1

name	Rtcd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313510 CCDS:CCDS17786.1 GeneID:66368 MGI:1913618
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0003963 - RNA-3'-phosphate cyclase activity [Evidence IEA] GO_process : GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 exception : mismatches in translation product : RNA terminal phosphate cyclase domain 1 protein_id : NP_079793.1

name	Dbt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753610 CCDS:CCDS17787.1 GeneID:13171 MGI:105386
definition	EC_number : 1.2.4.4 GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0031405 - lipoic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation note : BCKAD E2; part of the BCKAD complex; dihydrolipoyl transacylase; branched-chain alpha-ketoacid dehydrogenase, E2 subunit; dihydrolipoyllysine-residue (2-methylpropanoyl)transferase product : dihydrolipoamide branched chain transacylase E2 protein_id : NP_034152.1

name	LOC100043702 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251457 GeneID:100043702
definition	codon_start : 1 product : similar to UBE2D3 protein_id : XP_001481027.1

name	LOC100043705 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251459 GeneID:100043705
definition	codon_start : 1 product : similar to MGC89287 protein protein_id : XP_001481029.1

name	Lrrc39 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33636746 CCDS:CCDS17788.1 GeneID:109245 MGI:1924557
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : leucine rich repeat containing 39 isoform 2 protein_id : NP_780622.1

name	Lrrc39 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33636683 GeneID:109245 MGI:1924557
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : leucine rich repeat containing 39 isoform 1 protein_id : NP_081597.1

name	A930028L21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430711 GeneID:229780 MGI:1925219
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC229780 protein_id : NP_084292.1

name	Sass6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037301 CCDS:CCDS17789.1 GeneID:72776 MGI:1920026
definition	GO_process : GO:0007049 - cell cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation product : spindle assembly 6 protein_id : NP_082625.1

name	Hiat1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680221 CCDS:CCDS17790.1 GeneID:15247 MGI:1201609
definition	GO_function : GO:0015520 - tetracycline:hydrogen antiporter activity [Evidence IEA] GO_process : GO:0015904 - tetracycline transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : tetracycline transporter-like protein product : hippocampus abundant gene transcript 1 protein_id : NP_032272.1

name	Slc35a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450281 CCDS:CCDS17791.1 GeneID:229782 MGI:1917648
definition	GO_component : GO:0000139 - Golgi membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005338 - nucleotide-sugar transporter activity [Evidence IEA]; GO:0005351 - sugar porter activity [Evidence IEA] GO_process : GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0015780 - nucleotide-sugar transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3 protein_id : NP_659151.1

name	Agl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486747 GeneID:77559 MGI:1924809
definition	EC_number : 3.2.1.33 GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]; GO:0004135 - amylo-alpha-1,6-glucosidase activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0004133 - glycogen debranching enzyme activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0005978 - glycogen biosynthesis [Evidence IEA]; GO:0005977 - glycogen metabolism [Evidence IDA] codon_start : 1 product : amylo-1,6-glucosidase, 4-alpha-glucanotransferase protein_id : NP_001074795.1

name	Frrs1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677899 CCDS:CCDS17792.1 GeneID:20321 MGI:108076
definition	GO_function : GO:0004500 - dopamine beta-monooxygenase activity [Evidence IEA]; GO:0000293 - ferric-chelate reductase activity [Evidence IDA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006584 - catecholamine metabolism [Evidence IEA]; GO:0006548 - histidine catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : stromal cell derived factor receptor 2 protein_id : NP_033172.1

name	Palmd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89363042 CCDS:CCDS17793.1 GeneID:114301 MGI:2148896
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_process : GO:0008360 - regulation of cell shape [Evidence IEA] codon_start : 1 note : paralemmin-related product : palmdelphin protein_id : NP_075734.3

name	EG546808 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:546808
definition	number : 1 pseudo : _no_value

name	LOC100043710 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043710
definition	number : 1 pseudo : _no_value

name	LOC100043250 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043250
definition	number : 1 pseudo : _no_value

name	LOC100043250 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043250
definition	number : 2 pseudo : _no_value

name	EG668749 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668749
definition	number : 2 pseudo : _no_value

name	EG668749 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668749
definition	number : 1 pseudo : _no_value

name	LOC626061 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251455 GeneID:626061
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 45 ESTs, 4 Proteins product : similar to E74-like factor 1 pseudo : _no_value transcript_id : XR_034929.1

clone name	MSMg01-318D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478E18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-374O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337P09
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-423F17.T7 (MSMg01no423_f17.b1)	MSMg01-423F17.TJ (MSMg01no423_f17.g1)
ACC	AG517532	AG517533
length	753	750
length of high quality (start - end)	540 (32 - 571)	477 (63 - 539)
definition	CHROMAT_FILE: MSMg01no423_f17.b1 PHD_FILE: MSMg01no423_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:01 2005	CHROMAT_FILE: MSMg01no423_f17.g1 PHD_FILE: MSMg01no423_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:01 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCTGAC GAATACCGAATGGCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAAT CATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAG TCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGA TGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGT ACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAG TACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGAT GCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTT ATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGG AATGGATACAGAAGATGTGGTACATCTACACAATGGAGTACTACTCAGCT ATTATAAAGAATGAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGA GGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCCCACATAT GTACTCACTGATAAGTGGATATTATCCCAACACCTAAGATACCCTTGATA TAAGATACAATTCCCTACACCCTTGAACTCTTAAAAATGAAGACTGTAGT GTGAACCTAAGCCCCCTCCCATAATTGGGAGCAAACAACCTTGGTATGGA TTG	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXTTTGGATGGATATCTCTTTAATTTCACCTAACACTAAA AAGTAAGAAGAGATTTTCTTAAGAGTGTCCTGAATTATCACTTAAAAAAC CAGCTGTTACATCAAAGGAAGAGTACAGCCATGAAGCCAGTGGTGTGACT TGCTGCACAAATTTTATCACACACAATTACTTCTATGCACATCAGTCACT GTTCCCTCCCGGTGCGGATGGTCCTAGCATCTGTAGTGCTGGCTTGTAGC ATTAGGTGTAAGTGTAGCCTGAGGGTCAGCACATAAGAGGTGATATTCCT ACTGTTGAAATTTAGAGCTTTTTTCTGAGTTGGGACTAGAGTTCATGAGG TCTCACCTCCAGCTGAGGGGTTATTGGTAATTAATGTCTGCCAGGGGAAG GGGAGCCATTTTCTTCAGTGGTATAGCTGCTGATCATACACATACAAGCG ATTCTAATTAAATTCAGTGGATCGTCTTTTAAAAAGGCCAAGAAGAAAGA GGGGGGAAGAAAGGGTTCCAAAGATAGTGAGAAAGGGGAGAAGAGAGAGG AATGTGAAGGTGTGACTATTATTACATACACCGCATACATTTATGTATAT GTCAGTTAATACGCGTTTATTTTTGAAAAAAAAACTTTGGCTAAAAGCAA AAAGCTGCATTCTTAAGAACATTATTACCTGATTTAACGCTTATTATTTT
quality values	Open. Hide. 9 9 10 9 8 8 10 11 13 22 33 21 8 8 8 10 7 9 9 11 9 11 11 11 12 12 25 25 33 33 33 33 59 59 44 39 37 37 39 44 33 33 26 23 11 13 12 12 12 12 10 12 16 20 19 23 43 42 50 50 50 41 36 36 38 38 42 57 59 50 50 50 50 50 50 59 57 57 57 57 48 42 54 54 54 54 57 57 54 54 43 50 50 51 68 68 68 68 50 50 50 50 50 50 57 50 50 57 50 50 50 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 68 68 68 68 68 50 51 68 68 68 68 68 68 68 68 68 57 68 68 51 50 50 50 50 50 68 59 57 57 68 57 57 57 68 59 57 57 57 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 57 57 57 57 59 57 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 35 35 35 44 44 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 68 62 62 62 44 41 38 39 35 35 26 35 43 43 62 62 62 68 68 68 68 68 68 62 62 62 62 68 68 68 68 68 62 62 57 59 57 57 57 59 59 68 68 59 59 57 57 57 59 57 57 52 57 57 57 57 57 59 59 59 57 59 57 59 59 52 57 57 59 59 68 68 68 68 68 68 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 57 57 57 59 48 57 50 59 59 59 59 54 57 57 48 43 43 43 43 46 57 57 57 57 57 48 44 30 28 42 42 47 47 48 48 57 57 57 57 57 57 57 44 44 37 39 37 41 37 46 43 48 43 43 41 42 42 36 39 39 43 48 33 33 24 25 33 36 43 43 43 48 48 57 43 59 43 43 43 39 34 28 25 25 28 18 24 19 17 10 10 10 21 27 41 41 39 39 41 43 41 41 40 39 37 37 35 28 31 35 39 39 39 37 34 24 18 18 21 24 30 37 32 29 29 32 32 29 29 32 29 31 37 28 31 35 31 31 32 26 26 15 14 15 24 30 34 32 30 18 25 25 30 33 11 11 14 8 9 8 15 17 24 21 27 11 11 11 14 14 19 15 19 22 22 19 16 9 9 8 8 8 11 16 19 25 22 25 25 18 20 11 11 11 16 18 22 18 18 13 13 14 22 23 35 36 33 22 21 16 13 13 13 8 8 8 8 8 8 15 17 11 10 10 10 13 15 12 10 9 9 12 16 11 11 11 10 13 10 9 9 9 9 12 9 9 9 9 9 9 8 8 8 8 8 8 9 8 9 9 10 10 10 11 10 10 9 9 9 11 12 19 22 24 19 13 11 10 10 6 8 7 7 8 8 10 10 17 11 16 18 15 17 10 9 9 9 9 12 11 14 12 12 10 10 11 9 10 10 6 8 6 6 7 7 8 8 8 6 6 6 8 8 8 8 6 6 6 8 8 8 8 8 8 8 8 8 6 6	Open. Hide. 15 15 15 14 15 22 21 19 35 29 39 35 37 39 19 17 12 12 11 18 12 9 11 11 10 9 10 10 19 19 30 25 22 26 34 24 23 20 24 28 28 30 29 21 12 9 9 9 9 9 11 11 19 22 34 25 22 24 32 33 33 36 59 57 57 50 50 47 50 47 47 47 50 50 53 57 57 59 53 53 54 54 57 57 54 54 54 54 54 54 59 50 50 50 50 50 50 57 54 54 53 54 57 57 57 57 57 57 48 44 47 47 47 57 57 57 68 68 68 57 57 68 57 57 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 57 57 68 50 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 68 68 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 59 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 59 47 59 43 43 43 30 30 25 12 11 11 11 11 11 25 19 32 34 41 59 59 48 48 48 48 57 57 59 59 59 48 57 48 59 59 57 59 59 59 59 59 59 68 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 48 57 48 59 59 59 59 68 57 57 48 48 44 57 59 59 59 59 68 59 59 59 59 59 48 48 48 59 59 42 42 37 42 42 37 42 57 59 57 54 57 57 57 57 48 48 48 59 57 57 57 57 57 57 57 57 57 57 57 57 50 50 35 35 35 50 50 57 57 52 57 50 50 43 57 57 44 44 52 52 52 57 52 52 52 52 52 44 43 41 37 43 59 44 44 33 33 33 44 44 43 43 43 44 46 48 59 59 57 48 44 40 41 36 39 47 44 47 47 47 57 47 47 42 47 43 48 54 59 47 47 43 43 44 44 41 39 30 32 30 36 25 36 36 46 43 43 43 43 39 39 36 36 36 43 43 48 48 42 40 28 19 15 19 26 36 30 28 28 28 23 32 28 37 37 41 40 41 41 37 37 30 25 22 22 15 19 14 22 22 20 20 20 31 23 28 13 13 13 24 24 32 30 30 30 29 29 32 39 32 25 25 26 25 29 36 35 30 26 15 12 18 12 15 21 31 32 39 36 39 37 35 31 22 32 19 19 15 12 12 12 12 12 15 12 12 12 22 26 28 23 23 28 21 12 13 8 8 8 11 16 13 13 17 19 11 11 12 10 8 6 6 6 11 13 22 16 16 12 12 13 18 16 20 19 17 16 14 19 10 8 6 6 6 6 7 10 8 10 10 10 8 8 9 8 9 9 15 12 11 10 10 11 17 11 18 16 25 23 31 24 28 16 17 12 15 15 11 9 13 9 9 8 7 11 12 12 10 10 8 8 8 8 9 8 17 14 9 8 8 11 11 11 11 11 11 9 9 10 8 8 8 6 8 8 8 8 13 8 8 10 10 10 8 10 13 15 19 19 19 20 24 13 10 8 8 6 10 8 8 8 10 15 15 24 15 15

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no423_f17.g1 MSMg01no423_f17.g1 CHROMAT_FILE:
MSMg01no423_f17.g1 PHD_FILE: MSMg01no423_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:01 2005
         (477 letters)



>mm_chr3_115739125_115740001
          Length = 877

 Score =  853 bits (441), Expect = 0.0
 Identities = 468/477 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggatggatatctctttaatttcacctaacactaaaaagtaagaagagattttcttaa 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tttggatgaatatctctttaatttcacctaacactaaaaagtaagaagagattttcttaa 467

                                                                       
Query: 61  gagtgtcctgaattatcacttaaaaaaccagctgttacatcaaaggaagagtacagccat 120
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 466 gagtgtcctgaattaacacttaaaaaacaagctgttacatcaaaggaagagtacagccat 407

                                                                       
Query: 121 gaagccagtggtgtgacttgctgcacaaattttatcacacacaattacttctatgcacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaagccagtggtgtgacttgctgcacaaattttatcacacacaattacttctatgcacat 347

                                                                       
Query: 181 cagtcactgttccctcccggtgcggatggtcctagcatctgtagtgctggcttgtagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||
Sbjct: 346 cagtcactgttccctcccggtgcggatggtcctagcatctgtagtaccagcttgtagcat 287

                                                                       
Query: 241 taggtgtaagtgtagcctgagggtcagcacataagaggtgatattcctactgttgaaatt 300
           |||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 286 taggggtaagtgtagcctgagggtcagcacataagaggtgatactcctgctgttgaaatt 227

                                                                       
Query: 301 tagagcttttttctgagttgggactagagttcatgaggtctcacctccagctgaggggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tagagcttttttctgagttgggactagagttcatgaggtctcacctccagctgaggggtt 167

                                                                       
Query: 361 attggtaattaatgtctgccaggggaaggggagccattttcttcagtggtatagctgctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 attggtaattaatgtctgccaggggaaggggagccattttcttcagtggtatagctgctg 107

                                                                    
Query: 421 atcatacacatacaagcgattctaattaaattcagtggatcgtcttttaaaaaggcc 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 atcatacacatacaagcgattctaattaaattcagtggatcgtcttttaaaaaggcc 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information