Query= MSMg01no423_g18.b1 MSMg01no423_g18.b1 CHROMAT_FILE:
MSMg01no423_g18.b1 PHD_FILE: MSMg01no423_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:06 2005
(475 letters)
>mm_chr3_122937621_122938491
Length = 871
Score = 833 bits (431), Expect = 0.0
Identities = 461/474 (97%), Gaps = 7/474 (1%)
Strand = Plus / Plus
Query: 5 gaattctacagttccacgttaacatttgatgaaaagttttttactttcttgctttctaac 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacagttccatgttaacatttgatgaaaagttttttactttcttgctttctaac 264
Query: 65 ttcattttagctgaatgccagttctaatctaaatgagattatgggtattatgctaaactg 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcattttagctgaatgccagttcgaatctaaatgagattatgggtattatgctaaactg 324
Query: 125 aaaatcaatctaatgtgacaaagataaacaacgtattaaatagctattaggtgcaccaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaatcaatctaatgtgacaaagataaacaacgtattaaatagctattaggtgcaccaga 384
Query: 185 aagatagctgtaattaatgcattgtaaagaatctgtgaatacactgacgagactcagcag 244
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aag----ctgtaattaatgcattgtaaagaatctgtgaatacactgacgagactcagcag 440
Query: 245 gctgtacttatatagtttatgcatatatata--catatatatgtacccatacatacatac 302
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 gctgtacttatatagtttatgcatatatatatacatatatatgtacccatacatacatac 500
Query: 303 ataaatacatacttacatatttaaacattaaagaagaatccagaaattggggaaggaggg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaatacatacttacatatttaaacattaaagaagaatccagaaattggggaaggaggg 560
Query: 363 gacataggcagagttggaggaaggaaagagagtggagggaaataatgtaattatatttta 422
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 tacataggcagagttggaggaaggaaaaagagtggagggaaataatgtaattatatttta 620
Query: 423 ataaaataaaatttttaanaaa-aataaagtatctatgactatcttgagctctt 475
|||||||||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 621 ataaaataaattttttaaaaaataataaagtatctatgactatcttgagctctt 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 871
Length adjustment: 10
Effective length of query: 465
Effective length of database: 861
Effective search space: 400365
Effective search space used: 400365
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no423_g18.g1 MSMg01no423_g18.g1 CHROMAT_FILE:
MSMg01no423_g18.g1 PHD_FILE: MSMg01no423_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:06 2005
(489 letters)
>mm_chr3_123128881_123129769
Length = 889
Score = 770 bits (398), Expect = 0.0
Identities = 439/458 (95%), Gaps = 11/458 (2%)
Strand = Plus / Minus
Query: 1 tctacctgcttagatggagcccagctctagattcctgagccttctacctatcccattgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctacctgcttagatggagcccagctctagattcctgagccttctacctatcccattgcc 388
Query: 61 ttccccaggacacatacagtggtgccaggtgggagggaacatctggatactcagattagg 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 387 ttccccaggacacatacagtggtgccaggtgggagggaacatctagatactcagataagg 328
Query: 121 gtctcatgccttgctgctcctctatctgggggtggacacaacaacacccagtttgaatga 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 327 gactcatgccttgctgctcctctatctgggggtggacacaacaacacccagtttgaacaa 268
Query: 181 tctcttcaaagttgcaggggctggtggggggaatgacagctggataccccaagatggcag 240
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 267 tctcttcaaagttgcaggggctggtggggggaatgacagctggatgccccaagatggcat 208
Query: 241 ttgcttgtttcaaaagacagtcactcaaggcaactcagagaagaagaatgtatgtcttct 300
||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttgcttg--------g-c--tcactcaaggcaactcagagaagaagaatgtatgtcttct 159
Query: 301 gcaacagtgcagacagattttggggacattatgataaccaaaacaagacaaatacagcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gcaacagtgcagacagattttggggacattatgataaccaaaacaagacaaatacagcat 99
Query: 361 gatctcatatgtggaagctgaaagagttaaactcacagacgcagacagtattcagaatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 gatctcatatgtggaagctgaaagagttaaactcacagacgcagacagtattcagaatgg 39
Query: 421 cagcagacagtcagacaaatattgacagatggtaaatg 458
|||||||||| |||||||||||||||||||||||||||
Sbjct: 38 cagcagacagacagacaaatattgacagatggtaaatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
