CGTTATTATGATAACCACCAACCACTCTTGGTCTTCTCTTTCTTTACCAG
CTTCGTCGCTCCGAGTCGTTATGCCTCGTTGTCCGTATCTTGTTCTCTTC
TGCTTTTGCTCTGCTCCACCTGCAACCGTTGATCGAACGTTCCCGCACAT
TGATGTGCAATATTGCCCATCTTTTCCGCTCATTCCTTCCCGACGTTANC
NCGGCGTTCCCTNCCNNNNNTCNNCTCCAAAAAAATTGGCGGGGCGGGCT
TTAATAACGAACTCACCTATTTTCCGAAAAGGGAATCCCGGCCGGGNNAA
AATTTCCTCCCAAAACTTTTCCCCCGAAAAAAAAGGGCCCCCCCACCCGG
GGGAAAAAAAAANNNNNAAAAAAAAANNNNCCCCCCCCCTTTTTTTGTTT
NNCCCCCCCCCCAAAAAAAAAATGTGGGGCAATTTTTTCCCCAAGGAAAG
AAGGGTTTAAACAAANCCCATCCCGGCTAAAAAAATTAAACTTTTTTTAA
AAAAATTGGGGGGATAAAAACACCCNAAAAATTTTTTTTACAAAAGGGGG
GGAAGACCTTAAGGGGGGGGGGGGGGGCCCCCCCCCCAAAAAAAAAGAGG
GGGGGGGGGGGGGGAAAAAAAAAAGGGTGGGGGGGGAAAAAAGGAGGGAG
AAAAAAACAGGTGTGGGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTCTGGACTAATGTGGCCTCCCTTCAACTTTTCCAACTGTAA
AGCATAAAGAATCCAGCCACAGTGTCTTTGCCTTGTCAGTGGGAAAACAA
TACTGACACCCATAAATGGGTATGGGGGGGCTTCACAACACAGCACAGAA
AACACCCCCCTCTCTAGAGATGCTTTAAAATGTGTGCATTCACAGAGACT
GATGGCTGTTTCCATTCCTTGCCAACTGAAGCTTCGGATCTTCGCAGCTT
CTTCATCGAAAGGTTTCTCTGCATCTGATATCTGGTCATGTGTGAAGACC
TAAAAAAAAAACAAAAAACAAAAAACAAAAAAACAAAGTGTCTTCCCTCA
GCTAAGAATGCTGAGGTTCAACACCAAGAGAGTACAGTTGTTCTTACAGA
AAGCAGAAGGATACTCTTGGCAGCAACCCTGTTTCTTAATATGCATTTAA
TTGCCACATTATTTCTGGATTAGTAATACTTGTTTCCAGGGCTTATCAGA
GTATGCAGTGTGTGTGTAATGGAAAGCAATAAAAAGTAAAATTGTGAGGA
AAAAAATATATATATATACCGATAGATAGATAGATAGATTAGATAGATAG
ATAGATAGATAGATAGATAGGTAGATACGCTTTTCTCCCTTTTTTTTTTT
CTTTCTCCCCGCTTTTCTCCCCCCCTATCCCCTTTTTCCATTTCTCCCCC
CTTTCTTTTCTT

Query= MSMg01no423_h19.g1 MSMg01no423_h19.g1 CHROMAT_FILE:
MSMg01no423_h19.g1 PHD_FILE: MSMg01no423_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:11 2005
         (606 letters)



>mm_chr3_54163682_54164687
          Length = 1006

 Score =  977 bits (505), Expect = 0.0
 Identities = 568/599 (94%), Gaps = 22/599 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctggactaatgtggcctcccttcaacttttccaactgtaaagcataaagaatccagc 60
           ||||||||||||||||||||||||||||||||||||||||||      |||     ||||
Sbjct: 209 tctctggactaatgtggcctcccttcaacttttccaactgta------aaa-----cagc 257

                                                                       
Query: 61  cacagtgtctttgccttgtcagtgggaaaacaatactgacacccataaatgggtat--gg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 258 cacagtgtctttgccttgtcagtgggaaaacaatactgacacccataaatgggtatgggg 317

                                                                       
Query: 119 gggggcttcacaacacagcacagaaaacacccccctctctagagatgctttaaaatgtgt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gggggcttcacaacacagcacagaaaacacccccctctctagagatgctttaaaatgtgt 377

                                                                       
Query: 179 gcattcacagagactgatggctgtttccattccttgccaactgaagcttcggatcttcgc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 378 gcattcacagagactgatggctgtttccattccttgccaactgaagcttcgtatcttcgc 437

                                                                       
Query: 239 agcttcttcatcgaaaggtttctctgcatctgatatctggtcatgtgtgaagacctaaaa 298
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 438 agcttcttcatcgaaaggtttctctgcatctcatatctggtcatgtgtgaagacctaaaa 497

                                                                       
Query: 299 aaaaaacaaaaaac-aaaaaacaaaaaaacaaagtgtcttccctcagctaagaatgctga 357
           || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aacaaacaaaaaacaaaaaaacaaaaaaacaaagtgtcttccctcagctaagaatgctga 557

                                                                       
Query: 358 ggttcaacaccaagagagtacagttgttcttacagaaagcagaaggatactcttggcagc 417
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggttcaactccaagagagtacagttgttcttacagaaagcagaaggatactcttggcagc 617

                                                                       
Query: 418 aaccctgtttcttaatatgcatttaattgccacattatttctggattagtaatacttgtt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaccctgtttcttaatatgcatttaattgccacattatttctggattagtaatacttgtt 677

                                                                       
Query: 478 tccagggcttatcagagtatgcagtgtgtgtgtaatggaaagcaataaaaagtaaaattg 537
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 678 tccagggcttatcagagtatgcagtgtgtgtgtaatggaaaacaaaaaaaagtaaaattg 737

                                                                      
Query: 538 tgaggaaaaaaatatatatatataccgatagatagatagatagattagatagatagata 596
           ||||   ||| ||| ||| |||    ||||||||||||||||||| |||||||||||||
Sbjct: 738 tgag---aaagatagatagata----gatagatagatagatagat-agatagatagata 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)