This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
Search Parameter
BAC name
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search by nearby gene name.
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Search Result
BAC
Clone Name
MSMg01-423I21
Chromosome
3 (Build37)
Map Location
56,062,550 - 56,152,598
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Dclk1
,
Mab21l1
,
4933417G07Rik
Downstream gene
LOC100040139
,
LOC666585
,
Tm4sf1
Link
Open Mouse BAC browser
Click to get alignment info.
name
Dclk1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13175
MGI:1330861
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Mab21l1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17116
MGI:1333773
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
4933417G07Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:71182
MGI:1918432
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 5 Proteins
name
LOC100040139
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040139
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
pseudo
: _no_value
name
LOC666585
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666585
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 ESTs, 8 Proteins
pseudo
: _no_value
name
Tm4sf1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17112
MGI:104678
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Dclk1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130532
GeneID:13175
MGI:1330861
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: doublecortin-like kinase 1
transcript_id
: NM_019978.2
name
Mab21l1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31560806
GeneID:17116
MGI:1333773
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: mab-21-like 1 (C. elegans)
transcript_id
: NM_010750.2
name
Tm4sf1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:88900519
GeneID:17112
MGI:104678
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: transmembrane 4 superfamily member 1
transcript_id
: NM_008536.3
name
Dclk1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:9910164
CCDS:CCDS17359.1
GeneID:13175
MGI:1330861
definition
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0007409 - axonogenesis [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0030900 - forebrain development [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001764 - neuron migration [Evidence IGI]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]
codon_start
: 1
note
: doublecortin-like kinase; CLICK-I beta; doublecortin and calcium/calmodulin-dependent protein kinase-like 1
product
: double cortin and calcium/calmodulin-dependent protein kinase-like 1
protein_id
: NP_064362.1
name
Mab21l1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6754598
CCDS:CCDS17360.1
GeneID:17116
MGI:1333773
definition
GO_process
: GO:0001747 - eye development (sensu Mammalia) [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP]
codon_start
: 1
product
: mab-21-like 1
protein_id
: NP_034880.1
name
Tm4sf1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6678762
GeneID:17112
MGI:104678
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
codon_start
: 1
note
: membrane component, surface marker 1; L6 antigen; 12A8 target antigen
product
: transmembrane 4 superfamily member 1
protein_id
: NP_032562.1
name
LOC100040139
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100040139
definition
number
: 1
pseudo
: _no_value
name
4933417G07Rik
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:94369549
GeneID:71182
MGI:1918432
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 5 Proteins
product
: RIKEN cDNA 4933417G07 gene
transcript_id
: XR_002339.1
name
LOC666585
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149251157
GeneID:666585
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 ESTs, 8 Proteins
product
: hypothetical LOC666585
pseudo
: _no_value
transcript_id
: XR_031577.1
clone name
MSMg01-481J11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-343H08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-060A09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-111H05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-496I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452M12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-452M14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-393B13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-499B13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368C19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-204D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-268F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-268H01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-457D18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396G10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072P07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-507A15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-214A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436J14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-120F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-444M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-363N18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-333P10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-430C17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-146J12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490A06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-534K24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-446I02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-488E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-206L11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400O06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520O01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-126K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504M01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-102D03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423I21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-520G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-356F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434A06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-157I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103O07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-480L13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-397G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-174B15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-536G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-496D20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-524H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-345L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-491P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-172K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-542I17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531E22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-422D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-167D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-167D11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-440P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-344I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-447B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-422G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-163J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141F08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-093C09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-061D11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-119I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-380L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-357M15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-345M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-132K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-065I07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-174J16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-037M09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259D07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-055P24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-251P20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-187K13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-302D16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-216O09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-105A23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-015L15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-208A24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-138P24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-083B08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-261B10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-227O15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-312C03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-316K22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-296N18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-281O11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-181K08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-228G10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-114A18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-160N14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-101A09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-296D01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-111J24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-289A18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-322O11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-126D03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-270N17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-219M01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-137M09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-226K24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-238B18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-094L20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-152P03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-219C20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-092F02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-178P24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-242I03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-318I04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-120O05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-349I20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-306K02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-263I02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-275N02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-113P18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-272B14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-324N19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-136B24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-069G08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-322D09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-023D23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-038L23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-034N17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-270N06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-054K17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-255A10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-341F02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-185O19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-253K02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-208I09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-132A09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-231E18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-320C03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-114A24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-216D20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-179M24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-152H13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-139G02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-252F20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-207C01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-013D20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-078M19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-081B22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-174K15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-149F12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-200F13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-197H18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-154G19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-016H19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-092P24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-165E19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-291L15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-305D18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-154D15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-029C24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-159K07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-012O12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-061O06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-240P06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-287N16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-346O12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-192O08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-232I15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-273M12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-314G18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-204M10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-199A22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-315B06
singlet/doublet
doublet
plural/unique
unique