XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTAAAACT
CATCGAAACTATTACCTCATGAAAGTTCATCTTCATGATGATCTACAGGA
AAATTGCCCAATAGAGTGGTCTATCATCCAGGAAGTAATCACACCAGGCT
ATAGCCAATGAGGGTCTCTGCACTCCCAATCACACTATGCCAGATATATG
AGAACAATGACAAACGTGAGAAGACACATCAGAAGCAAGAAGAAATCTGG
GGACAAAGCCCCTGGAGCTGTGCCTCTCCCAGGTACACCCATCAAATCTG
TGCAGACTGGTGGGCTGTCTTCAGGAAGTTCACTTATCCACTGCACCTCA
TTTTTCATGGCATCTGCCAAATCTATATTACATACAAACATATACAGAGT
GAGAGACAGACAGACAGACAGACAGACAGACACATAAAACTCTGAAAAAA
TACAAACAAAATACCAAGGGAAAATGCCCAATATTGGAGAAAGGTCTAAA
CCAATTAATTTTGAGATGTCTTTGGGTTGTCCATGGATATGAAGNCTGCC
CTGCAGTGTNATAGTACACCCAAGGGAGGTCCATTGAAGAAGAAAAACCT
TCTTTCCCAGAGGGACCAAATACCCTACCTTATTGGTAGGGGATGAAAAT
GGTCCCTTTCCCCTTCCCGGGGGGGGCCCTCTAGTTGGATTTGTTCAACC
CCTTTATAAACCCATTTTCTTAATTTTTGGGAAAATCCCCCCGAGGGGGG
GGGATAAGATTTCTTTTGGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAAAGTTCAAAGTTATTCTTGGCTATATAATGAATTTGAG
GCCAGCCTGGGGTACATGAGACCGTGTCTTGATCTTTTAAATTAATGATT
AAAAAAATGGAAGAATGATACATTCATCTAGACCTAGGTACTGGATGTGG
TCTTGAAGTGATTGGAGCAGTAGACTGGGCATTAGAGCAGGTGGAAGGAA
ACATCTGAGTCTTCAGTTCCCAGTAGCACTCTCGGGGGTCCAGCAGCACA
AAGATGCAGGGGTTAGCCAGGATCACTGCCAGGCAATTGTCCAGGCAGAC
AGCTTCAGGAACCTCTGATGAAGTGAAAAAAATTGGTGAGGGATCTAATC
TTAGAAGACCTGAGTGTCCCTAGGCAGGTTGCTGAGACAGACTTAGGCAT
AAGTAAGGACAGAGGCACTCAGTAGGGACAAGGCAGTCATGCAGCTGTCA
GAACTGAGTCAGAGCAGAGGTGATTTGATTTCAAGCAGCACATCCCTTAT
CGTCATTTTTTGGCTCTAGGGACTTGGCTCTTAAACTTGTTGGCCAGAAA
CTACTCCAGAGCAAGNAGAAGGGAAATGGAACTCCTACATGAATTAGAAT
ATTACCTCCTACATAAATCCTCTCAGGGCTTTCCCTACTCCCCTGAAAGC
CCTTCAAAATTCTTGTTTATGAACCCAGGGGTTTTAAGAACTTTTCTAAA
ACCCTTAATTTTACCCTGGC

Query= MSMg01no423_k24.g1 MSMg01no423_k24.g1 CHROMAT_FILE:
MSMg01no423_k24.g1 PHD_FILE: MSMg01no423_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:26 2005
         (447 letters)



>mm_chr3_31272474_31273319
          Length = 846

 Score =  795 bits (411), Expect = 0.0
 Identities = 438/447 (97%), Gaps = 1/447 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagttcaaagttattcttggctatataatgaatttgaggccagcctggggtacatgaga 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aaagttcaaagttattcttggctatataatgaatttgaggccaacctggggtacatgaga 260

                                                                       
Query: 61  ccgtgtcttgatcttttaaattaatgattaaaaaaatggaagaatgatacattcatctag 120
           | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 ctgtgtcttgatcttttaaattaatgat-aaaaaaatggaagaatgatacattcatctag 319

                                                                       
Query: 121 acctaggtactggatgtggtcttgaagtgattggagcagtagactgggcattagagcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acctaggtactggatgtggtcttgaagtgattggagcagtagactgggcattagagcagg 379

                                                                       
Query: 181 tggaaggaaacatctgagtcttcagttcccagtagcactctcgggggtccagcagcacaa 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggaaggaaacatccgagtcttcagttcccagtagcactctcgggggtccagcagcacaa 439

                                                                       
Query: 241 agatgcaggggttagccaggatcactgccaggcaattgtccaggcagacagcttcaggaa 300
           ||||| ||||||||| ||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct: 440 agatggaggggttagtcaggatcactggcaggcaaatgtccaggcagacagattcaggaa 499

                                                                       
Query: 301 cctctgatgaagtgaaaaaaattggtgagggatctaatcttagaagacctgagtgtccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctctgatgaagtgaaaaaaattggtgagggatctaatcttagaagacctgagtgtccct 559

                                                                       
Query: 361 aggcaggttgctgagacagacttaggcataagtaaggacagaggcactcagtagggacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggcaggttgctgagacagacttaggcataagtaaggacagaggcactcagtagggacaa 619

                                      
Query: 421 ggcagtcatgcagctgtcagaactgag 447
           |||||||||||||||||||||||||||
Sbjct: 620 ggcagtcatgcagctgtcagaactgag 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 846
Length adjustment: 10
Effective length of query: 437
Effective length of database: 836
Effective search space:   365332
Effective search space used:   365332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)