GCTATACGACTCACTATATTCAGAGAATCCGCGGAATTCTCTAGCATATG
CTGGGATTACAGGTGTGTGCTCTCACAACTGGAAACACCCGTAGCTGATT
ATCCATCCAGATGAAATTTTAAGTCCTTTTGTCAGATCTCCAATCAGCCC
CTGCCCGCTACTTTCTTTGCAGTCACTACAGTAGTGGGAGAGTGCTGAAT
GCAATATCTGTTCAATCTGGATTCACCCATACTGACCCAAAGGTCACTAT
GTTTTCTATTCTAGAACATGTGCTACCTTATGTCTCTTGACAAGCTTTAA
TTCTTTTCTTCACATAGGGCCTGAGGATTTCTTTCTAAAATTTTGTTATT
CAAGACTCCACCTCAAAAAATTCCATAAAAAAGAATGTTGTTGATTTGAA
TATATTTGGTTTGTATCTATCCACATTTCTGAATTATTACTGATGGACCA
TGTTTTCATTCATTCATAGTATTGTTTTGGTTTTTGTCATATTTATGATT
GTTGCTCCTACGTATGCTCTTCTGTTGGTGACTAAAGTTACATAAATAAT
TAAGCCTTGCCTTAATCCGAGTTCCTTGTAGCATTCTTTTACTCCAAAAA
TAATTAAGATTTTGTTGTTGCGGCCCTCTTGGCACCTAGTAAATAAAATC
AAAAAAAATCCGTGTTCTATCCCTCCTTATCTTATCCCCACATTATTTTC
CCCCCCCCACCTCTAATTCTCTTTTTTCTCCCTCTTCTTCCTATTTTACT
TTTTCCCGTTTTTACCCT

TGGGCGGCCGGCTGGTTTCCNACANNNANGNGAACNANANAANGTTCCCC
GAAAANCNNNNGNNNAGCNCNGNACCCCANNNNNAAANANGGNNGGNNGG
GCTTTTTGCAGNCNAACTTCNTGACTTCTTTATATAAATTGGATATTACC
CNCTGCAATCTCCCTGTCTCNNNNTTTCCNCNCTGNNNTANCANCACACA
CCATGGCGGACTTGANNNNATAAATTCCTCNCCNTTTGTTCCACCANNNT
CTTTTACAACGNNAACCNNNTCCCCTGNCCCNTTCTTTTCTTCNCCCAAA
NNCATNTNNNNNNNNNAGGAAAAAANAAATGNNNNTNNGNGTCCGTGGGA
GAAAGAGGAGAAAAAGGAGAGAGAAGGGAGATGGAGGAGGAGAGGGAGGG
AAGGGGTGGGGTGGGGGGGGGGTGAGGGACATGGGGGGGGAGTGGAGGTG
ATACAAAATAAAAACAGANNNNAANATAAACCCGCAGTGGGGNNNNNNNN
NNNNNNNNNNNNNNNCCNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN
NNNNNCNNNNCCNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNC
CCCCCCNCCCCCCGAGAGAACAGAAA

Query= MSMg01no423_m22.b1 MSMg01no423_m22.b1 CHROMAT_FILE:
MSMg01no423_m22.b1 PHD_FILE: MSMg01no423_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:34 2005
         (445 letters)



>mm_chr3_28195827_28196673
          Length = 847

 Score =  777 bits (402), Expect = 0.0
 Identities = 435/446 (97%), Gaps = 2/446 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattacaggtgtgtgctctcacaactggaaacacccgtagctgattatccatccagatga 60
           |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 646 gattacaggtgtgtgccctcacacctggaaacacccgtagctgattatccatccagatga 587

                                                                       
Query: 61  aattttaagtccttttgtcagatctccaatcagcccctgcccgctactttctttgcagtc 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 586 aattttaagtccttttgtcagatctccaatcagcccctgtccgctactttctttgcagtc 527

                                                                       
Query: 121 actacagtagtgggagagtgctgaatgcaatatctgttcaatctggattcacccatactg 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 526 actacagtagtgggagagtgctgaatgcaatatctattcaatctggattcacccatacta 467

                                                                       
Query: 181 acccaaaggtcactatgttttctattctagaacatgtgctaccttatgtctcttgacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 466 acccaaaggtcactatgttttctattctagaacatgtgctaccttatgtctcttgacaaa 407

                                                                       
Query: 241 ctttaattcttttcttcacatagggcctgaggatttctttctaaaa-ttttgttattcaa 299
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 406 ctttaattcttttcttcacatagggcctgaggatttctttctaaaatttttgttattcaa 347

                                                                       
Query: 300 gactccacctcaaaaaattccat-aaaaaagaatgttgttgatttgaatatatttggttt 358
           ||||||||||||||||||||||| ||||||||||||||||||||||  || |||||||||
Sbjct: 346 gactccacctcaaaaaattccataaaaaaagaatgttgttgatttgtgtacatttggttt 287

                                                                       
Query: 359 gtatctatccacatttctgaattattactgatggaccatgttttcattcattcatagtat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gtatctatccacatttctgaattattactgatggaccatgttttcattcattcatagtat 227

                                     
Query: 419 tgttttggtttttgtcatatttatga 444
           ||||||||||||||||||||||||||
Sbjct: 226 tgttttggtttttgtcatatttatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 847
Length adjustment: 10
Effective length of query: 435
Effective length of database: 837
Effective search space:   364095
Effective search space used:   364095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)