BAC Information

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BAC

Clone NameMSMg01-423O09
Chromosome3 (Build37)
Map Location 95,535,613 - 95,536,012
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4
Downstream geneEcm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423O09.T7 (MSMg01no423_o09.b1)MSMg01-423O09.TJ (MSMg01no423_o09.g1)
ACCAG517946AG517947
length813727
length of high quality
(start - end)		57 (113 - 169)532 (64 - 595)
definitionCHROMAT_FILE: MSMg01no423_o09.b1 PHD_FILE: MSMg01no423_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:41 2005CHROMAT_FILE: MSMg01no423_o09.g1 PHD_FILE: MSMg01no423_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTAATCNACTCACTATCAAAAGAGGATCCGCGGAATTCTTTTGTGC
GTTTAATATAGTACCATAAGTTGTTCATTCAGTGGCATCTCCTTCGTTGG
AGCTCTCACCAGCCAAATGTGACAGTTGTAAAGTGCAAGTAAGGTTGAAT
CCTGCTTGTTTTCACTCANCAATCCAAGTATGAACCTATGAATTGGTTTT
TTTTAGGGTTTTTTTTTCCAAATGTTTTTTTTATCTTTTTTTCACACAAA
AANNNATATATTTTTATGTNNNNCCCTCTNNNCAAAAGGAATCCCNACCA
GAATTTTTTTTGGGGGGGAGGGAAAGAAAGGAGGAGATNNNNNNNNNNTT
TTTTTTCCCTTTTTTTTTTTCTTTTTATCTNCCTCTTTTNNTTCTGGAAT
TTTTTTTTTTAAACCACAATCCCCCCAAAATAAAAAGGGACGGGCGAAGG
GAGAGGTAGGAAAAGAAGAAAAAAAATAAANTNNNNNNNTNNNCCCCCCC
CNNNNNCTCCCNNNNCCCTCTTTTTCTTTTTTTTTCTTCCCTTTTTTTTT
TTNNNNNNNNNNNNNNNCNCCCCACCAACCAAANNNNCNTTTTTTNNNNN
NNNNNNCCNNNNCCCNNCNAAAACCTCCCCNCCCNNCTTCTCTTTTTTTC
TTTTTTTCTCTTATCTCCTTCGTCCCCNTTTTTCNNCTTNTTTTTCTCTT
TTTTTTCTTTCTCNTTTTTCCTTTCCTCNTTTTTTAAAAATCCCCTCTTT
CTTTTTTCTCTTCTTTTTTTCTTTTTTTCTTTCTCTTTCCTCTTCTACCT
TCTCAAACCACCG

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCACAGATCAGTTAAAGCTTGATGGTGGGCGAAGGGAG
GTGGAAGGTGATAGAAGAGCATTGGCTGCAGTAACTCCAGTTCCAGGTGA
TCCAACACTCACTCACACAGACACACATGCAGGCAGAACACCAATAGACA
TAAAATAAATCTAAAAACAAAAAGGCTTCAGGGGCTGGAGCGATGGCTGC
TCCCAACATCCACATGGTGGCTCACAACTCTGTAAATGAAGCAGGGATCG
GAAGTTCTTTTTTGGCCTCTGCTAGCACCAGATACATACAGGCCTGCAGA
CAAGAGTTAATCTTGTCTTTTAAAAAAAAATTAACAAAAAATAAACAAGT
TCAGATTTTGTTGGAAGGGATTGGAAAAATGGCTCAGAAAGTTAAGAAAA
CCTAAGTTCAGTTGATGAGCCATAGAAAGGTCACATCTGCATGTAACTAC
AGATCCCAGGGCCCTACTGCCTCCACCAGCACACACTACACACATGGTAG
ACATGTGGCACACAACAATGAAAATATTAAAATAAGCTGGGCAGAGGCGG
TACATGCCTTTAGTACCAGTACTCAGGAGGCAGAGGCCTGTGAATTTTTA
CGAACTTGAGGTCAGCCCGCTCTAACTAATCTCCAGACAGGTAGGGTTAC
ATGAGCCCCTGGCCCAAAATATAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_o09.g1 MSMg01no423_o09.g1 CHROMAT_FILE:
MSMg01no423_o09.g1 PHD_FILE: MSMg01no423_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:41 2005
         (532 letters)



>mm_chr3_95535081_95536012
          Length = 932

 Score =  675 bits (349), Expect = 0.0
 Identities = 388/401 (96%), Gaps = 3/401 (0%)
 Strand = Plus / Minus

                                                                       
Query: 131 atagacataaaataaatctaaaaacaaaaaggcttcaggggctggagcgatggctgctcc 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 atagacataaaataaatctaaaaacaaaaaggcttcaggggctggagcgatggctgctcc 873

                                                                       
Query: 191 caacatcc-acatggtggctcacaactctgtaaatgaagcagggatcggaagttcttttt 249
           |||||||| |||||||||||||||||||||||||||||||||||||||||||  || |  
Sbjct: 872 caacatccaacatggtggctcacaactctgtaaatgaagcagggatcggaagccctctcc 813

                                                                       
Query: 250 tggcctctgctagcaccagatacatacaggcctgcagacaagagttaatcttgtc-tttt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 812 tggcctctgctagcaccagatacatacaggcctgcagacaagagttaatcttgtcttttt 753

                                                                       
Query: 309 aaaaaaaaattaacaaaaaataaacaagttcagattttgttggaagggattggaaaaatg 368
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 752 aaaaaaaaa-taacaaaaaataaacaagttcagattttgttggaagggattggagaaatg 694

                                                                       
Query: 369 gctcagaaagttaagaaaacctaagttcagttgatgagccatagaaaggtcacatctgca 428
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 693 gctcagaaagttaagaaaacctaagttcagttgacgagccatagaaaggtcacatctgca 634

                                                                       
Query: 429 tgtaactacagatcccagggccctactgcctccaccagcacacactacacacatggtaga 488
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 633 tgtaactacagatcccagggccccactgcctccaccagcacacactacacacatggcaga 574

                                                    
Query: 489 catgtggcacacaacaatgaaaatattaaaataagctgggc 529
           ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 573 catgtggcacacaacaatgaaaatattaaaacaagctgggc 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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