CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGTTTCTCATTGTAGGCATAAATGACACCATCACATACCTTCAC
AAGCAAAGTAGAGAGGACCATGGAGTTTGGGTGTTTATATCTTCTCATAG
AGGAGACAAAACATAAATGTGTTAATGAAGTAATAAGAAAAATAAAATTA
GCTAATATGACAGGAGGTGAGGATGGGTTTACATTGTGTATCTGCGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCATATGGNTACC
TGTATATGCACATGTTTGTGTAGGCAGAGGACAATATCAGCCTTAGGCAC
TTATTTTCTCTCCCTGATCCAAGAATCACCAAGTAGGCTAGGCTGCCTGG
CCAGGAAGCCCTTGAGAGCCACCTGACTCTTCACCTTGGTGCTGGGACTA
CAGGTGTGTGCCAGCACGCACAATGGTTTTCATGAGTTCTAGGCATGGAG
CACCCCAGCCCAGGCCTCGTTTCAGATTTCTGTGACTCAAGTGTTGTATA
AGCTGAGGAAGTACACGTTTCCATGGAATGGAAAAAATGAAGCCCATACC
TTATGGATAATGAACTTGCTCAGAGGCGCCTTTGGAATTGGCATTTTTAT
TGATGTGGCCTTCCCTTGAAAGCTAAGATCTCCTCTGACTGGATAAAACA
GCTACTCACCATATGGCAATATCTTCTCCTGGTCTGTCTCTACATATACG

ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGATTAGAAGCTATAAAAGCA
GCATGTAAAAGCAAATGGTATTGGTACGTACTGACAGAACATAACCTGGA
ATGGAAGTCAAGGAAGCAAGCCCATTTACAATAGCTAATCACCAAGAAGT
TAAACACCTGGCAATGATCTCTCTAATAGATGAAAGACCTCTAAAACATA
TTATAAAGCCATGGTGAAAAGAAGTTGTAAAAGAAAACAGCTCAGGACCT
TGAGTTGGGAAAATCAATACTTTTTAAAAATAGCCACATGCTTCAAGTGG
GTGACAGATTCAATGACTATCTTGTCCAAATACTAATGGAAATATTAAAA
CCGCTCTAAAGTTTATATGAAACCACCAAGAGTCCTATAAGCCAAAGCCA
TTTTGGCTAACAACAAATAGAGGAAAGATACCGCGTGATCTGCGGGTGGC
CTGAATGAGAGTGGCTCTAAATGTCTGCTCTCCCCAATGATATATTGTTT
ATGTAGTATTACTTGTGTGTGTTCTTTTTTCCTTACCATTCCATTTCCTA
ACTTTTCCCTTTCTTCTTCCCCTTCCTTCTACCCCTCGTTTCCTTGTTTT
TTACCCTTTCTTTTTTTCACTTCTTCTATCCTTCTCTTTCATCTCCTTCT
TCTCCCTCCCCTTTTCTCCCTTTTACTCTTTTCACTTTTTCCCTCCTCCC
CCCTTTTTTTTCTCCACCTTTTATTTCCCTT

Query= MSMg01no424_b17.b1 MSMg01no424_b17.b1 CHROMAT_FILE:
MSMg01no424_b17.b1 PHD_FILE: MSMg01no424_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:58 2005
         (509 letters)



>mm_chr3_33850721_33851629
          Length = 909

 Score =  781 bits (404), Expect = 0.0
 Identities = 472/505 (93%), Gaps = 18/505 (3%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcattgtttctcattgtaggcataaatgacaccatcacataccttcacaagcaaagt 65
           |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcattgagtgtcattgtaggcataaatgacaccatcacataccttcacaagcaaagt 265

                                                                       
Query: 66  agagaggaccatggagtttgggtgtttatatcttctcatagaggaga-caaaacataaat 124
           ||||||||||||||||| ||||||||||||||||||||||||||||| | |||  |||||
Sbjct: 266 agagaggaccatggagtctgggtgtttatatcttctcatagaggagagc-aaatgtaaat 324

                                                                       
Query: 125 gtgttaatgaagtaataagaaaaataaaattagctaatatgacaggaggtgaggatgggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 gtgttaatgaagtaataagaaaaataaaattagctaatatgacaggaggtgaggacgggt 384

                                                                       
Query: 185 ttacattgtgtatctgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtt 244
           |||||||||||||||||                |||| ||||||||||||||||||||||
Sbjct: 385 ttacattgtgtatctgc----------------gtgtatgtgtgtgtgtgtgtgtgtgtt 428

                                                                       
Query: 245 catatggntacctgtatatgcacatgtttgtgtaggcagaggacaatatcagccttaggc 304
           ||||||| |||||| |||||||||||  |||| |||||||||||||||||||||||||||
Sbjct: 429 catatgggtacctgcatatgcacatgcatgtggaggcagaggacaatatcagccttaggc 488

                                                                       
Query: 305 acttattttctctccctgatccaagaatcaccaagtaggctaggctgcctggccaggaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 acttattttctctccctgatccaagaatcaccaagtaggctaggctgcctggccaggaag 548

                                                                       
Query: 365 cccttgagagccacctgactcttcaccttggtgctgggactacaggtgtgtgccagcacg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cccttgagagccacctgactcttcaccttggtgctgggactacaggtgtgtgccagcacg 608

                                                                       
Query: 425 cacaatggttttcatgagttctaggcatggagcaccccagcccaggcctcgtttcagatt 484
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 609 cacaatggttttcatgagttctaggcttggagcaccccagcccaggcctcgtttcagatt 668

                                    
Query: 485 tctgtgactcaagtgttgtataagc 509
           ||| |||||||||||||||||||||
Sbjct: 669 tctatgactcaagtgttgtataagc 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)