BAC Information

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BAC

Clone NameMSMg01-424B20
Chromosome3 (Build37)
Map Location 86,175,786 - 86,175,901
singlet/doubletsinglet
Overlap geneLrba
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201
Downstream geneMab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424B20.T7 (MSMg01no424_b20.b1)MSMg01-424B20.TJ (MSMg01no424_b20.g1)
ACCAG518111AG518112
length755757
length of high quality
(start - end)
116 (431 - 546)---
definitionCHROMAT_FILE: MSMg01no424_b20.b1 PHD_FILE: MSMg01no424_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:58 2005CHROMAT_FILE: MSMg01no424_b20.g1 PHD_FILE: MSMg01no424_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTAGTTTTCCTCAATATACACCATAAGCTCAGAAGAATGTGTCATAGA
TGTAACATTTTTATTACAAGTGTACATTTCTCATAAACATTTTAAAAAGT
TTTGAACTAAAATTAATGTTGAAAGAGTTCTCGATATTGGTAAGGTTAGG
GTGTGTCATACAAGAAGCACATATTTCCGTAACTAATCGAGTATCTTAAA
TACCTCATGGGAGACAATGTGTCTTGTGAAACGGAGACCACTGCTGCTAC
TGATGGCAAGTTTGCATTATGAGATCTACTTCCTATAAGAGAAAAAATAA
ATATTTCACAGTGGTTTTCTGGATCTAGATATAACGATTCAAGCAAATAC
AATCTCTTTATAAACAAACATGTATTAAATGTATTTTTTCACACATGTAT
CACTCTTAGATAAAGTCTAACTATTAAAGTCTTTCTCTAAATATTTATAT
GTAAATCCCTTTATAAGGTCAGTTGTGTTAGGTAACCCTCCTACCCAAGG
CGTAGAGAAGTAGCAGACAAGTATTGACAGACTCTGATCCGCTGAGTTAG
CTTTACAATTTCTTTTATTTAGCACCATTAAACATAACTAACAGAAGTTT
TCTTTTTCATGAAGTAAGACCTGGAAAGATAAAATTCTAATTTGGCTTTA
ACAGCTGTGTCACTATCAACAAGAGGATGACCTTTTAACCCTCCCTGGAG
AGGAT
CAATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGGTCACCCTGATCTACAGAGGGAAT
GCCAAATGAACCGAGGCTAATATGAGAGATTCGCTGTCGAAAGAGAGAAT
CAGATATCTCCAGTGGAGTCTCACTGAATATGCGAATCACATTTATTACC
ATGCCCCATGCCCAACAGTATACAGCCACCACAGAATGAGCTCAAAGGCC
GTAGCATGACGGTCTCTGTCTCACTAAGACTTGGTGAGATTTGTATGCTG
ATCGTTTTGTGATATCAATATATGTCTTTCACTTGGGAATATTATGGCTA
CCAAGCATATTTTTTCTTATGTGAGTGCATTGGAAGCATAGGAGAGACTC
TGCTACTGTTAGATTTGCCCCTTTTCTTTGCTTCCTTTGTTTATTACTGG
TAATGTAGACCAATTCAGGATTGCTGAATTAGAACATGTATTTTCTTTAT
TTCTTCCTACCTTTTTTGGCCATTTCTAGACTATTGAAATTTTAGTTTTC
CCCCTTTATCAAATATAAATACATTGCTTTTTAATAAAAATTAAATTGTG
TATATGTATGTATGTTTGTCCATAAATATACACCCCCCTGCCTATTTACA
AAAATCTTCTTTTTCTTTTCACTTTCGCTGTTCGCCCTGCTACCAATTTT
TTTTTACCCCTTACATTTTCCCATTCCATCTACTTTTCTCCCTTTTCTCT
TCTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_b20.b1 MSMg01no424_b20.b1 CHROMAT_FILE:
MSMg01no424_b20.b1 PHD_FILE: MSMg01no424_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:58 2005
         (116 letters)



>mm_chr3_86175586_86176101
          Length = 516

 Score =  201 bits (104), Expect = 1e-56
 Identities = 113/116 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtattttttcacacatgtatcactcttagataaagtctaactattaaagtctttctctaa 60
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 316 gtattttttcaaacatgtatcactcttagataaagtctaacaattaaagtctttctctaa 257

                                                                   
Query: 61  atatttatatgtaaatccctttataaggtcagttgtgttaggtaaccctcctaccc 116
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttatttatatgtaaatccctttataaggtcagttgtgttaggtaaccctcctaccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)