BAC Information

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BAC

Clone NameMSMg01-424J12
Chromosome3 (Build37)
Map Location 29,047,511 - 29,047,831
singlet/doubletsinglet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424J12.T7 (MSMg01no424_j12.b1)MSMg01-424J12.TJ (MSMg01no424_j12.g1)
ACCAG518477AG518478
length717730
length of high quality
(start - end)
517 (51 - 567)323 (327 - 649)
definitionCHROMAT_FILE: MSMg01no424_j12.b1 PHD_FILE: MSMg01no424_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:35 2005CHROMAT_FILE: MSMg01no424_j12.g1 PHD_FILE: MSMg01no424_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTCTACGACTTTTATCATGAATGGGTGTTGGATTTTGT
CAAATGATTTCTCAACATCTAACGAGATGATCATGTGATTTTTGTCTTTG
AGTTTGTTTATATAGTGGATTACATTGATGGATTTCCATATATTAAACCA
TCCCTGCATCTCTGGTATGAAGCCTACTTGGTCACGATGGATGATCATTT
TGATGTTTTCTTGGATTTGGTCAAAAGGGTTTTATTGAGTATTTTTGTAT
CCATATTCATAAAGGAAATTGTTCTGAAGTTTTCTTTCTTTGTTGGATCT
TTGTGTGGTTTAGGTATCAGAGTAATTGTGGCTTTGTAGAATGAATTGGG
TAGAGTACCATCTGTTTCTATTTTGTGGAATAGTTTGTGAAGAACTGGAG
TTATTTCGTCTCAGAAGGTCTGATAGAAATCTGCACTAAACCTGTCTGGT
CCTGGGCTTTTATTGGTTGAGAGATGATTAATAACTGCTTCTATATATTT
AGGGGAGATGGGGGTGTTTTGNNNCNTNTTTTTTTTTTGTTTTCTTTCNT
NCCTTGGTCTCTGTGTTGTTTTTCCTTTGTTTCCCGTTTCTTTTTTCTTT
TCTTCCTTGTTCCTCTCTTGTGTTTCCTCTTTGCCCCTCCTTCCTTTTCC
TTTTTTTCCTCTCCTTG
NNCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAACCTGGAACCATGCTTTC
ATATTAAGATTTATCTTAAATTTAGATCTTTTTGAGTCATTTACATAAAA
CTCAACCCATTAGCACCCATTAGTATCAAAAGGTTCTTATGGGATTTGTG
AGACTATTTTAAATCTTTGAAAACATGAGGTCTCCCTGAAGCTGGGACGC
TTATAAAGCATGGTGGACGCTTGCTTTTCTCCCTTCTCCCAGCCTGCTGG
GCTGATCCGCATTCAAAGGTTGTTGTAAAGTTAAAGAATCTGTGGTATCA
AAGGGTTTCACCGCGACAAGAGCAGGTCAGATGTTGGTTCACAGCTGCAG
AGGCCCTGGATCAAGCAGAGCCAAATTTAGCAAACCAACACAATATCCCT
TGTTTCTGCAGGTTCTCTGATCTTTAGCTTTCAATGCTACATCATATCCT
GAGGTAAAATTGGTGTCATGAAACCAAAAATAGTTCACACATAATCGAGA
TTTAACATAAAGTAAGCACCCAGCCCACTGATGAAGGAAGCTTTGTAACT
GTGAATCTTCTTGGTAAGTGCTCCTTGGCCCTTTTACTTAATTATCCTAC
CATTTCCTACAGCAGCTCCCTGGATAAAGCACCGAGGATCAGTGAGGAGA
GGCTTCTGGTTTGTCGATTTACCACTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_j12.g1 MSMg01no424_j12.g1 CHROMAT_FILE:
MSMg01no424_j12.g1 PHD_FILE: MSMg01no424_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:35 2005
         (323 letters)



>mm_chr3_29047311_29048033
          Length = 723

 Score =  613 bits (317), Expect = e-180
 Identities = 320/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagttaaagaatctgtggtatcaaagggtttcaccgcgacaagagcaggtcagatgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aaagttaaagaatctgtggtatcaaagggtttcaccgcgacaagagcaggtcagatgttg 462

                                                                       
Query: 61  gttcacagctgcagaggccctggatcaagcagagccaaatttagcaaaccaacacaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gttcacagctgcagaggccctggatcaagcagagccaaatttagcaaaccaacacaatat 402

                                                                       
Query: 121 cccttgtttctgcaggttctctgatctttagctttcaatgctacatcatatcctgaggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cccttgtttctgcaggttctctgatctttagctttcaatgctacatcatatcctgaggta 342

                                                                       
Query: 181 aaattggtgtcatgaaaccaaaaatagttcacacataatcgagatttaacataaagtaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaattggtgtcatgaaaccaaaaatagttcacacataatcgagatttaacataaagtaag 282

                                                                       
Query: 241 cacccagcccactgatgaaggaagctttgtaactgtgaatcttcttggtaagtgctcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cacccagcccactgatgaaggaagctttgtaactgtgaatcttcttggtaagtgctcctt 222

                                
Query: 301 ggcccttttacttaattatcc 321
           |||| ||||||||||||||||
Sbjct: 221 ggcctttttacttaattatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)