BAC Information

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BAC

Clone NameMSMg01-424L07
Chromosome3 (Build37)
Map Location 134,903,606 - 134,904,131
singlet/doubletsinglet
Overlap geneCenpe
Upstream geneCxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290, EG620439
Downstream geneBdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424L07.T7 (MSMg01no424_l07.b1)MSMg01-424L07.TJ (MSMg01no424_l07.g1)
ACCAG518562AG518563
length747757
length of high quality
(start - end)		531 (51 - 581)570 (80 - 649)
definitionCHROMAT_FILE: MSMg01no424_l07.b1 PHD_FILE: MSMg01no424_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:43 2005CHROMAT_FILE: MSMg01no424_l07.g1 PHD_FILE: MSMg01no424_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTATTACAATGTACAGTCAGAACAAACAGTCAGGAAGAG
AGTGTGGGAGTTCACCTTTTCCTCTAACTTCTCTTCTGTTTTTGCCAATC
TTTCCTGCGTCCTGGAGAGCTCCTGGGTCTTCTCGGTGGCATGATCCTTT
TCCTGTGCAGCTACCTCTTGTTGTCTTTTCAGTTCATCTCTAAGAATTCT
TAACTCTTCCTGGTTTTCAATACTCTAGAGTTAAAAAAAATACTCAGAAA
TGACTTTTGACTCAAAAATGAAGAAATCCAAGTGCAACTACAGAGCAAAA
GGCAGCTGTACAGAGATGTCAGTATGCTGTCAGTGGCCAAAGAGACTAAA
GCCACATTTTTCCTCTGAAGCTTTCATGACTGGATTCAAGCACTGATCAA
TGATGGTTCCCACTCTTTTCTGGCAGATGTGGTTTAATTCATTATTAAGA
TCATATAGCACCATGCTTGTATATGAAGGTCAACAAAACATATCAAATTA
GGGAAAGAATATACTTTGTGTTTGCATGTTAATTTTCATTCAGTTTGTTG
ATAAACCAGACNATCCTAAATATAGAAAATTAAAATAGCCTAAAGTGTCA
GGTGGTAACGTATCCACAGTGGATTTCCAAAATTATTAATTTCAACCCAT
ACAGAATTATAAGGCCCTTGTAACAAATTCAAAACTGAAGCCAAAAG

NATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATG
GCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCCGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
TAAGTGGATATTAGCCCACAACCTAGGATACCCAAGATATAAGATACNAT
TTCCTAAACACATGAAACTCTTAAAAAATGAAGACTGAAGGGTGGACACT
ATGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_l07.b1 MSMg01no424_l07.b1 CHROMAT_FILE:
MSMg01no424_l07.b1 PHD_FILE: MSMg01no424_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:43 2005
         (531 letters)



>mm_chr3_134903402_134904331
          Length = 930

 Score =  965 bits (499), Expect = 0.0
 Identities = 520/527 (98%), Gaps = 1/527 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattattacaatgtacagtcagaacaaacagtcaggaagagagtgtgggagttca 64
           ||||||||||  | ||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 730 gaattcattagcaaaatgtgcagtcagaacaaacagtcgggaagagagtgtgggagttca 671

                                                                       
Query: 65  ccttttcctctaacttctcttctgtttttgccaatctttcctgcgtcctggagagctcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ccttttcctctaacttctcttctgtttttgccaatctttcctgcgtcctggagagctcct 611

                                                                       
Query: 125 gggtcttctcggtggcatgatccttttcctgtgcagctacctcttgttgtcttttcagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gggtcttctcggtggcatgatccttttcctgtgcagctacctcttgttgtcttttcagtt 551

                                                                       
Query: 185 catctctaagaattcttaactcttcctggttttcaatactctagagttaaaaaaaatact 244
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 550 catctctaagaattcttaactcttcctggttttcaatactctagagtt-aaaaaaatact 492

                                                                       
Query: 245 cagaaatgacttttgactcaaaaatgaagaaatccaagtgcaactacagagcaaaaggca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cagaaatgacttttgactcaaaaatgaagaaatccaagtgcaactacagagcaaaaggca 432

                                                                       
Query: 305 gctgtacagagatgtcagtatgctgtcagtggccaaagagactaaagccacatttttcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gctgtacagagatgtcagtatgctgtcagtggccaaagagactaaagccacatttttcct 372

                                                                       
Query: 365 ctgaagctttcatgactggattcaagcactgatcaatgatggttcccactcttttctggc 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttgaagctttcatgactggattcaagcactgatcaatgatggttcccactcttttctggc 312

                                                                       
Query: 425 agatgtggtttaattcattattaagatcatatagcaccatgcttgtatatgaaggtcaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agatgtggtttaattcattattaagatcatatagcaccatgcttgtatatgaaggtcaac 252

                                                          
Query: 485 aaaacatatcaaattagggaaagaatatactttgtgtttgcatgtta 531
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaaacatatcaaattagggaaagaatatactttgtgtttgcatgtta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space:   479320
Effective search space used:   479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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