NTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCTTTCTCCCTCAATCAACCGAACCAATTCTCCAAAGTTGTTC
CCAGGTGTGCTGATTGGGCAGCAACTAGCCAACAGTAAATACTATCTTAT
TAGGGAAAAATTCATTCTGGGTGTTAAAGGAAAATTCCCAAGCACATCTA
TCAGTGCTCAATCAAAGCCATACAAACACAGGACTCCTGCCTCCTCTGCC
TGTAACGTGATGAGCCAGAAGCAGTTGAATGGCATTGGGAAAATACTTTA
GAACCCAAACAGATTTTATCATCCAGTTGCTCTGAGCACATAGGCTTGAT
ACTTGAATTCGGAGAGCCTCGGGTTTCTACACTAAATACATTTCAATAAA
CACACTCATTTGTGAGAGTTGAATGAGGTGATATATAGAAAGGCCCAGCA
TCCAATGTTCACTCAAGACATTGAAATTCTCCATGTGATAATACCATTTC
TCCTGTGTTCTCTGTTTTTCCTTCAACACCATTTCTAGATTTTTGTCCTC
AACTTCATGGCAGTCCTTCCTTCTTGCATTATTGCTTCCTGCCTAGAGTT
AAATTAGTGCCACCACTTTATAGGTTATCATTGATGAGAATTCCTTCCTA
ACACCTACTTACTCAAAAGCTTCCACTTATTTACGTACTTATTTATTGTA
TATTTAAATTGAAAACATTCTACAAGTGGCACT

CCAAAACCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATAC
CGAATGGCAGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAG
GGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAA
TGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGA
GAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACC
ACTCTGGAAATCAGTCTGGCGGTTCCTCTTTTTTACTGGATATAGTACTA
CCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCC
AACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTA
TAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGG
ATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAA
AAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGTACCTGAAGGGCA
TCATCCTGAGCGAGGTAACACATTCACAAAGGAACTCACACAATATGTAC
TCACTGATAAGTGGATTTTTCCCTATAACCCAACATATCCTTGACATTTT
ATACTATTTCCTAAACTN

Query= MSMg01no424_l13.b1 MSMg01no424_l13.b1 CHROMAT_FILE:
MSMg01no424_l13.b1 PHD_FILE: MSMg01no424_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:45 2005
         (583 letters)



>mm_chr3_117680403_117681382
          Length = 980

 Score = 1046 bits (541), Expect = 0.0
 Identities = 572/583 (98%), Gaps = 3/583 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcaatcaaccgaaccaattctccaaagttgttcccaggtgtgctgattgggcagcaac 60
           ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 780 cctcaatcaaccgaaccaattctccaaagttgttcgcaggtgtgttgattgggcagcaac 721

                                                                       
Query: 61  tagccaacagtaaatactatcttattagggaaaaattcattctgggtgttaaaggaaaat 120
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct: 720 tagccaacagtaaatactatcttattggggaaaaattcattctgggtgttgaaggaagat 661

                                                                       
Query: 121 tcccaagcacatctatcagtgctcaatcaaagccatacaaacacaggactcctgcctcct 180
           ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||
Sbjct: 660 tcccaagcacatctatcagtgctcaatcaaagccatacaa--acaggaatcctgcctcct 603

                                                                       
Query: 181 ctgcctgtaacgtgatgagccagaagcagttgaatggcattgggaaaatactttagaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ctgcctgtaacgtgatgagccagaagcagttgaatggcattgggaaaatactttagaacc 543

                                                                       
Query: 241 caaacagattttatcatccagttgctctgagcacataggcttgatacttgaattcggaga 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 caaacagattttaccatccagttgctctgagcacataggcttgatacttgaattcggaga 483

                                                                       
Query: 301 gcctcgggtttctacactaaatacatttcaataaacacactcatttgtgagagttgaatg 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gcctcaggtttctacactaaatacatttcaataaacacactcatttgtgagagttgaatg 423

                                                                       
Query: 361 aggtgatatatagaaaggcccagcatccaatgttcactcaagacattgaaattctccatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aggtgatatatagaaaggcccagcatccaatgttcactcaagacattgaaattctccatg 363

                                                                       
Query: 421 tgataataccatttctcctgtgttctctgtttttccttcaacaccatttctagatttttg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 362 tgataataccatttctcctgtgttctctgtttttccttcaacaccatttctaga-ttttg 304

                                                                       
Query: 481 tcctcaacttcatggcagtccttccttcttgcattattgcttcctgcctagagttaaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcctcaacttcatggcagtccttccttcttgcattattgcttcctgcctagagttaaatt 244

                                                      
Query: 541 agtgccaccactttataggttatcattgatgagaattccttcc 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agtgccaccactttataggttatcattgatgagaattccttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 980
Length adjustment: 10
Effective length of query: 573
Effective length of database: 970
Effective search space:   555810
Effective search space used:   555810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)