BAC Information

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BAC

Clone NameMSMg01-424L15
Chromosome3 (Build37)
Map Location 94,364,270 - 94,364,761
singlet/doubletsinglet
Overlap geneSnx27
Upstream geneS100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4
Downstream geneLOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424L15.T7 (MSMg01no424_l15.b1)MSMg01-424L15.TJ (MSMg01no424_l15.g1)
ACCAG518578AG518579
length745743
length of high quality
(start - end)		584 (46 - 629)469 (73 - 541)
definitionCHROMAT_FILE: MSMg01no424_l15.b1 PHD_FILE: MSMg01no424_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:45 2005CHROMAT_FILE: MSMg01no424_l15.g1 PHD_FILE: MSMg01no424_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCTAGCCGCAGGGGGATGCTGAACAAAACAAGTTAGCTGGGGA
TAATTGCACATAGGTTTTGTGGCAGCATGGTCTCTGTGTTCTTAGAGCTG
TACACAAACTTTAGAAATGAGAGCTGATTAGTTATGGAACTTTTTGAGAA
TTAACCTAGGACTTTGGAAACTTCTGTAAGCCTTGAGACAAGGAATGAAA
CTACTAATTATTCTTTTGTAAAGGGTCAGTTTTATTAGCAAAGTTTTTGT
ATGTTAACTTTCATCTGCCTAGATGTCCAGTTTTATGATGTTTATAGTCT
TTTATGTACTACCACATAAGGACAGAATACTTTCAGCAGCCCCAAGTTCC
CCTGTTACGTTTTATAGTTATTTTCCTTTGCTAACTAACCACTGATCTGC
TTTCTGTCTCTATATTTCTCTCTCTCTCTCTCTCTCTCTTGGAATGCCAA
ACAAACATTGTGTACTTGTATTAGTTACTGCAGCAAAACACCACACAGCA
GTAAGCTGAGGAAGGGAAGGTTTGTTTGGGCTCATGGTTCAAGTACTGAG
TGTTAGGGAAGGCATGGGGGCTGAAGTGTTTCCAGTTGCTGTGGTTGGAA
GCCATAGGCAGTCAGTCACATCACGCCCACACCCAGGAAGCAGGAAGAGA
AGAATGCTTAACTTGCTTTCTCCTTTTAACTTTTAATTCACCCGG

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGAGAAAATTTCCAGGGTATATAAATGC
TAGGACCCCTAGAGATGGGTTTGGTAGTTATTGGTCGTTCGAGGGGGCTG
GTTGCAGTTTGTTAGTAATCAAAGAAACAAAAGGAATTAGAAAAATTAGA
TTCAGGGATCTCTCTCCCTTCATCCTCTCCCTCCCCCTCCCTCTTCTCCA
CTCTCCTCTCCCCCTCTGCCCCCACCTTTCCAGTCTATCCTTATTTCTTT
CCTAGATGGGGGTGAAACTTTATGGGGCAATAAACGGTGGGGAAAAAGAA
GACCTCCCAAAGAAGCAAAGACCAGCTACAGACCCTTTCAAAACATTTTA
AAAACCAGAAGGCATGAACATGCTGCACACCTGTAATCCCAGCAGTTGAG
AGACTGAAGCAGAAAGTACCTCAAGTTCAGGACCAAGCTGGGCTACTGAG
AGACCAGGGTCAACAAAGAAGTGAGATTGGAGATATAGCTCAGTAGTAGA
ACATTCACCCAACATGTGGGAGGAAGGAGGAGAAAGCTAGAAGGGAGTAT
GGTTATCTTGTAAGGATAACTGCCTACCATTCTGTGAGTTTCTATTGGTG
GATAAGGACTAATAAATGGATATTCCAATTATCTTAGACATTGGAGCTTT
TTTGGGAATTTTACAACTTACATTGTTCTTTGCGTTTTTCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_l15.b1 MSMg01no424_l15.b1 CHROMAT_FILE:
MSMg01no424_l15.b1 PHD_FILE: MSMg01no424_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:45 2005
         (584 letters)



>mm_chr3_94364270_94365253
          Length = 984

 Score =  913 bits (472), Expect = 0.0
 Identities = 487/492 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcctagccgcagggggatgctgaacaaaacaagttagctggggataattgca 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggaattcttcctaggggcagggggatgctgaacaaaacaagttagctggggataattgca 433

                                                                       
Query: 64  cataggttttgtggcagcatggtctctgtgttcttagagctgtacacaaactttagaaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cataggttttgtggcagcatggtctctgtgttcttagagctgtacacaaactttagaaat 373

                                                                       
Query: 124 gagagctgattagttatggaactttttgagaattaacctaggactttggaaacttctgta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gagagctgattagttatggaactttttgagaattaacctaggactttggaaacttctgta 313

                                                                       
Query: 184 agccttgagacaaggaatgaaactactaattattcttttgtaaagggtcagttttattag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agccttgagacaaggaatgaaactactaattattcttttgtaaagggtcagttttattag 253

                                                                       
Query: 244 caaagtttttgtatgttaactttcatctgcctagatgtccagttttatgatgtttatagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 caaagtttttgtatgttaactttcatctgcctagatgtccagttttatgatgtttatagt 193

                                                                       
Query: 304 cttttatgtactaccacataaggacagaatactttcagcagccccaagttcccctgttac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 192 cttttatgtactaccacataaggacagaatactttcagcagccccaagttcccctgttat 133

                                                                       
Query: 364 gttttatagttattttcctttgctaactaaccactgatctgctttctgtctctatatttc 423
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 132 gttttatagttattttcctttgttaactaaccactgatctgctttctgtctctatatttc 73

                                                                       
Query: 424 tctctctctctctctctctcttggaatgccaaacaaacattgtgtacttgtattagttac 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 72  tctctctctctctctctctcttggaatgccaaacaaacaatgtgtacttgtattagttac 13

                       
Query: 484 tgcagcaaaaca 495
           ||||||||||||
Sbjct: 12  tgcagcaaaaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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