BAC Information

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BAC

Clone NameMSMg01-425E12
Chromosome3 (Build37)
Map Location 66,145,795 - 66,146,151
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425E12.T7 (MSMg01no425_e12.b1)MSMg01-425E12.TJ (MSMg01no425_e12.g1)
ACCAG519001AG519002
length748737
length of high quality
(start - end)
553 (39 - 591)499 (69 - 567)
definitionCHROMAT_FILE: MSMg01no425_e12.b1 PHD_FILE: MSMg01no425_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:27 2005CHROMAT_FILE: MSMg01no425_e12.g1 PHD_FILE: MSMg01no425_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTTCTGCTCTGAGCCCCATTTTTTAATGAGGTAATTTGATTTTCTGGAC
TCCACCCTCTTGGGTTCTTTATATATATTGGATATTAGTCCCCTATCTGA
TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCT
TATTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCC
CATTTGTCAATTCTGGATCTTACAGCACAAGCCATTGCTGTTCTATTCAG
GAATTTTTCCCCTGTGTCCATATCTTTGAGGCTTTTCCCCACTTTCTCCT
CTATAAATTTCAGTGTCTTTGGTTTTATGCAGAGTTCCTTGATCCACTTA
GATTTGACCTTAGTACAAGAGGATAGGAATGGATCAATTCGCATTCTTCT
ACATGATAACCACCAGTTGTGCCATCACCATTTGTTGAAAATGCTGTCTT
TCTTCCACTGGATAGTTTTAGCTCTCTTGTTGAAGATCAAGTGACCATAG
GTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTTCATTGGTCTACTTG
TCTGTCATTATACCAGTGCCATGCAGTTTTTATCACAAATGCTCTGTAAA
CAGCTTTTAAGCCCAGGATGGGGATTCCCCCATAAGTTCTTTTATCCCTT
GAGAGAAGTTTTTGCTTCCCCAAGTGGTTTTTTTTTTATCCCCAAGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGTGCTCTCAGTCACACAGTAATATACAGCT
CACACCATTACAAACTCAGACACATTTGCACAAACTCATACACACACTCA
CACACACACACACACGCACATATGCACACCTGTACACAATAAGAAGCCAA
ACTTGGTCTGCCATAATGGTTCAAGTAAAGGTACTTGTTTCCAAGCACGA
TGGCTAGGGTTGGATTCCAGGGCTCCACATGGTAGATTAGAAAACAGACT
CAATTACCTTGTGCTCTGACCACCACACAGACACTGTGGCATGCATGAAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACCACACTAGACAAAAAAATTTAAAGCCAGGCTTTCTCTGGTAGGCTA
CATAGATGCCTCTTTTCTTCTCCCATGACAGCTATTCAATATTGACATAT
GTGTTCTTTTACATAGCAACAAATATAAGGGCCTTGTAGATATGTCTTAC
CTTGCAGATTTTGAGGCAGGGGATATTCCTGGGTTATCTGCTGGCGCCTA
ACTATAGTCACACATGATCTTGTATAAAGAAAGGTTGGCGAGATTTGGAA
AAAAAAACCATCAACCTAAATCAATACCACCATCCCATTTTGGTCCGCAA
GATAATCCCCTATAAAAAGGAGCCGCTACTTACCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_e12.g1 MSMg01no425_e12.g1 CHROMAT_FILE:
MSMg01no425_e12.g1 PHD_FILE: MSMg01no425_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:27 2005
         (499 letters)



>mm_chr3_66145254_66146151
          Length = 898

 Score =  607 bits (314), Expect = e-178
 Identities = 352/376 (93%), Gaps = 19/376 (5%)
 Strand = Plus / Minus

                                                                       
Query: 124 agaagccaaacttggtctgccataatggttcaagtaaaggtacttgtttccaagcacgat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 agaagccaaacttggtctgccataatggttcaagtaaaggtacttgtttccaagcacgat 839

                                                                       
Query: 184 ggctagggttggattccagggctccacatggtagattagaaaacagactcaattaccttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ggctagggttggattccagggctccacatggtagattagaaaacagactcaattaccttg 779

                                                                       
Query: 244 tgctctgaccaccacacagacactgtggcatgcatgaacacacacacacacacacacaca 303
           || ||||||||||||||||||||||||||||||||||                  |||| 
Sbjct: 778 tgttctgaccaccacacagacactgtggcatgcatga------------------acacg 737

                                                                       
Query: 304 cacacacacacacacacacacacacacacacaccacactagacaaaaaaatttaaagcca 363
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 736 cacacacacacacacacacacacacacacacaccacactagac-aaaaaatttaaagcca 678

                                                                       
Query: 364 ggctttctctggtaggctacatagatgcctcttttcttctcccatgacagctattcaata 423
           |||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 677 ggctttctctggtatgctacatagatgccacttttcttctcccatgacagctgttcaata 618

                                                                       
Query: 424 ttgacatatgtgttcttttacatagcaacaaatataagggccttgtagatatgtcttacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttgacatatgtgttcttttacatagcaacaaatataagggccttgtagatatgtcttacc 558

                           
Query: 484 ttgcagattttgaggc 499
           ||||||||||||||||
Sbjct: 557 ttgcagattttgaggc 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 19
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 898
Length adjustment: 10
Effective length of query: 489
Effective length of database: 888
Effective search space:   434232
Effective search space used:   434232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)