Query= MSMg01no425_h20.b1 MSMg01no425_h20.b1 CHROMAT_FILE:
MSMg01no425_h20.b1 PHD_FILE: MSMg01no425_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:43 2005
(534 letters)
>mm_chr3_76850519_76851453
Length = 935
Score = 876 bits (453), Expect = 0.0
Identities = 516/549 (93%), Gaps = 22/549 (4%)
Strand = Plus / Plus
Query: 4 ggaattccaatggatagtgaatcctagagacaaggaagattgaagcacaggtgtatacaa 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ggaattccaatggatagagaatcctagagacaaggaagattgaagcacaggtgtatacaa 248
Query: 64 aaactattttaggtctttctactggaagatagagcatgcacttcatagaatgctataggt 123
||||| ||| |||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 249 aaactctttgaggtctttctcctggaagatagagcatgcacttcatagaatgctacaggt 308
Query: 124 tatgacctgtgtgcataacttcctcttagtcatagtctatagctaaagcagtagaattat 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 309 tatgacctgtgtgcataacttcctcttagtcatagtctatagctagagcagtagaattat 368
Query: 184 tataaatgtctgtccctcatacccactgttgatatactggagagtctgggttgagttgac 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ---aaatgtctgtccctcatacccactgttgatatactggagagtctgggttgagttgac 425
Query: 244 aacaaaagatgtttgtgtttaattcatctttcccttccccgccccctttcattctctctc 303
|||| ||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 426 aacacaagctgtttgtgtttaattcatctttcccttccccaccccttttcattctctctc 485
Query: 304 ctttttccttcctacccatcctctttttctctgtcttattttcaaaagatccatttt-cc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 486 ctttttccttcctacccatcctctttttctctgtcttattttcaaaagatccatttttcc 545
Query: 363 cttccaattttcatattttccttcttactgtttatttt------------gaaaaaaaaa 410
|||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 546 cttccaattttcatattttccttcttactgtttattttttcttttgttttgaaaaaaaaa 605
Query: 411 a------tgagtcccaaaggacaatcatgactatttgtaaaccattataagtccattaac 464
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aaagaaatgagtcccaaaggacaatcatgactatttgtaaaccattataagtccattaac 665
Query: 465 attttctggtaagttaaaggtggtaaatttgtaaataaggccaacaagacaagaaaatct 524
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 666 attttctggtaagttaaaggtggtaaatttgtaaatagggccaacaagacaagaaaatct 725
Query: 525 actgacgta 533
|||||||||
Sbjct: 726 actgacgta 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space: 484700
Effective search space used: 484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_h20.g1 MSMg01no425_h20.g1 CHROMAT_FILE:
MSMg01no425_h20.g1 PHD_FILE: MSMg01no425_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:43 2005
(501 letters)
>mm_chr3_77018182_77019083
Length = 902
Score = 886 bits (458), Expect = 0.0
Identities = 491/502 (97%), Gaps = 1/502 (0%)
Strand = Plus / Minus
Query: 1 ctagatgaagttatgaacattggccctgacaaaattttcatcatattttgttgttgttgt 60
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 702 ctagatgaagttatgaacattggccctgacaacattttcatcattttttgttgttgttgt 643
Query: 61 tctgtatttgtattgtgcccttcatttttgcttggaagtttttccctgaaccggaaatcc 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 642 tctgtatttgtattgtgcccttcatttttgcttgcaagtttttccctgaaccggaaatcc 583
Query: 121 agttttattgcggttaatgcatcagtatttcattcactctcacttcttttacatcttcca 180
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 582 agttttattgctgttaatgcatctgtatttcattcactctcacttcttttacatcttcca 523
Query: 181 tgtagatatccgtgaatttagcaaagaatggaaaccaaaaatgagcagtttgacaaagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 522 tgtagatatccgtgaatttagcaaagaatggaaaccaaaaatgagcagtttgacatagcc 463
Query: 241 aaagactcctgaaggacaatgaacaatttcaactttaaagactgtgaagagaacataaat 300
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 462 aaagactcctgaaggacaatgaacaatttcaattttaaagactgtgaaaagaacataaat 403
Query: 301 atatacagactaaacctaatacatttttcatcaact-aaaaaaagatcaatgaaaaatac 359
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 402 atatacagactaaacctaatacatttttcatcaactaaaaaaaaaatcaatgaaaaatac 343
Query: 360 agtttgtggtgcatgttgaattgactcaactaaaatgtgattgctactgactagtttaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agtttgtggtgcatgttgaattgactcaactaaaatgtgattgctactgactagtttaca 283
Query: 420 gcaagtggttctggataagttctgcactgcatggtgtggcataaatacactctgccatat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gcaagtggttctggataagttctgcactgcatggtgtggcataaatacactctgccatat 223
Query: 480 gtcatgtttattattatttttc 501
|||||||||||| |||||||||
Sbjct: 222 gtcatgtttattgttatttttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 902
Length adjustment: 10
Effective length of query: 491
Effective length of database: 892
Effective search space: 437972
Effective search space used: 437972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
