BAC Information

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BAC

Clone NameMSMg01-425I16
Chromosome3 (Build37)
Map Location 60,419,040 - 60,419,542
singlet/doubletsinglet
Overlap geneMbnl1
Upstream geneEG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485
Downstream geneLOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425I16.T7 (MSMg01no425_i16.b1)MSMg01-425I16.TJ (MSMg01no425_i16.g1)
ACCAG519200AG519201
length750762
length of high quality
(start - end)
609 (35 - 643)503 (65 - 567)
definitionCHROMAT_FILE: MSMg01no425_i16.b1 PHD_FILE: MSMg01no425_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:47 2005CHROMAT_FILE: MSMg01no425_i16.g1 PHD_FILE: MSMg01no425_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCT
GATGACTACCGAATGGCAGAGAAGCACCTGACAAAATGTTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGA
GGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCT
TGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACA
TAGTACTACAGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAA
GATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAG
AGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCA
GCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCT
GGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACA
ATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATATCCAA
GATATAAGATATAATTTGCTAAACACATGAAACTCAAGAAGAATGAAGAC
TGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACAAACACCCCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTGTTTAGTGAGTAGTATAAAAACAAATACCAGTA
AAAAGAGAAAAAGAAAAAAAGAGAAATCAGTTGTAGGCTAGAACAGTTAG
GGGGCACGAGCAAGCAAGCAGCAGAACACTTAACTACCCAGGGGGACAAT
CCAGGTGACAAAACCAATTAAAGAAATTAAGCAAGATAAAAGCTTTAGAG
GAAGCATTATTTTGTCCACAACAAAAGCCCACGAGTAACGAGAGCACATG
TTATAACGCGGAAGGTCTTTTATGTCCCATAATGCTTCGGGCTTTCTGTG
AGAAGCCATCTATTTGGGGAAGAAGGAAAGCTGCCGCGGGAGCCCCGTGA
GGACTGCCAAGTAGAAGCACTGTTAATAGTTAACTGTACAGTGACTGGCT
GGGTCCTGCCAGCTCTGCCCTCCCCAGCCTGCTGACACATGCAAATGTCC
CAGAGCATGCAAACTCTTCTGAAATACTGCACTCTATGTTAAAAAGAAAA
GAAGCCTATCACTAAAGCCATGCTAACCACACAGGTACATAAATATAGAG
TGAACACCACACTTTATCGTCCTCCGAGTCTTTCATTANAACGTTTTACA
ATATAGTTAAACTGAATGTGGGCTGCTGGGATTCCGGCTTTCATTGTCCT
TATCCCTCCATGTATGGCTTTTAGGCCTTTCTGGCCATTTTTTCCGGAAC
CCCACTCCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_i16.g1 MSMg01no425_i16.g1 CHROMAT_FILE:
MSMg01no425_i16.g1 PHD_FILE: MSMg01no425_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:47 2005
         (503 letters)



>mm_chr3_60418840_60419742
          Length = 903

 Score =  973 bits (503), Expect = 0.0
 Identities = 503/503 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgtttagtgagtagtataaaaacaaataccagtaaaaagagaaaaagaaaaaaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 cctgtttagtgagtagtataaaaacaaataccagtaaaaagagaaaaagaaaaaaagaga 644

                                                                       
Query: 61  aatcagttgtaggctagaacagttagggggcacgagcaagcaagcagcagaacacttaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aatcagttgtaggctagaacagttagggggcacgagcaagcaagcagcagaacacttaac 584

                                                                       
Query: 121 tacccagggggacaatccaggtgacaaaaccaattaaagaaattaagcaagataaaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tacccagggggacaatccaggtgacaaaaccaattaaagaaattaagcaagataaaagct 524

                                                                       
Query: 181 ttagaggaagcattattttgtccacaacaaaagcccacgagtaacgagagcacatgttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ttagaggaagcattattttgtccacaacaaaagcccacgagtaacgagagcacatgttat 464

                                                                       
Query: 241 aacgcggaaggtcttttatgtcccataatgcttcgggctttctgtgagaagccatctatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aacgcggaaggtcttttatgtcccataatgcttcgggctttctgtgagaagccatctatt 404

                                                                       
Query: 301 tggggaagaaggaaagctgccgcgggagccccgtgaggactgccaagtagaagcactgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tggggaagaaggaaagctgccgcgggagccccgtgaggactgccaagtagaagcactgtt 344

                                                                       
Query: 361 aatagttaactgtacagtgactggctgggtcctgccagctctgccctccccagcctgctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aatagttaactgtacagtgactggctgggtcctgccagctctgccctccccagcctgctg 284

                                                                       
Query: 421 acacatgcaaatgtcccagagcatgcaaactcttctgaaatactgcactctatgttaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 acacatgcaaatgtcccagagcatgcaaactcttctgaaatactgcactctatgttaaaa 224

                                  
Query: 481 agaaaagaagcctatcactaaag 503
           |||||||||||||||||||||||
Sbjct: 223 agaaaagaagcctatcactaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)