Query= MSMg01no425_i17.b1 MSMg01no425_i17.b1 CHROMAT_FILE:
MSMg01no425_i17.b1 PHD_FILE: MSMg01no425_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:47 2005
(541 letters)
>mm_chr3_30805659_30806599
Length = 941
Score = 1000 bits (517), Expect = 0.0
Identities = 535/541 (98%)
Strand = Plus / Minus
Query: 1 tgcagatgagttcagggcacaagagattgatgggcaggccctgctcttgctaaaagaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcagatgagttcagggcacaagagattgatgggcaggccctgctcttgctaaaagaaga 682
Query: 61 ccatctcatgagtgcaatgaacatgaagctgggcccagccctgaagatttgtgcacgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccatctcatgagtgcaatgaacatgaagctgggcccagccctgaagatttgtgcacgcat 622
Query: 121 caactctctgaaggactcttaacaggagcgaggctttgtgcttctcagcccattcctctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caactctctgaaggactcttaacaggagcgaggctttgtgcttctcagcccattcctctc 562
Query: 181 acaaggtgaaggtaaagccttgctgggattctctcctgagaatatcagactgatggagga 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaggtgaaggtaaagcctcgctgggattctctcctgagaatatcagactgatggagga 502
Query: 241 aggccgagtgcattgttaccgccacggccagtgccgacgtttctcttcagatgtcctaac 300
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggccgagtgcactgggaccgccacggccagtgccgacgtttctcttcagatgtcctaac 442
Query: 301 tcatcatacattttcataattagtgaacatcggtgacattaattttaccacttacatgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatcatacattttcataattagtgaacatcggtgacattaattttaccacttacatgct 382
Query: 361 acactgaaagacttgttacagaggcccatatttttcaaagaaacatgttatactagataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acactgaaagacttgttacagaggcccatatttttcaaagaaacatgttatactagataa 322
Query: 421 ttttttaaaggtaatgtttatcattaatataaaaaaaccttttaaaaataattattgatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttaaaggtaatgtttatcattaatataaaaaaaccttttaaaaataattattgatt 262
Query: 481 tacactccccctccttgaattctcttttcttatatgttttcctacccagttagttttcta 540
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tacactccccctcctttaattctcttttcttatacgttttcctacccagttagttttcta 202
Query: 541 a 541
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_i17.g1 MSMg01no425_i17.g1 CHROMAT_FILE:
MSMg01no425_i17.g1 PHD_FILE: MSMg01no425_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:47 2005
(484 letters)
>mm_chr3_30630444_30631327
Length = 884
Score = 857 bits (443), Expect = 0.0
Identities = 475/486 (97%), Gaps = 3/486 (0%)
Strand = Plus / Plus
Query: 1 actgtgcattttctaaagccgagtcaaaacagacctctcctccctgaagatgctttcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtgcattttctaaagccgagtcaaaacagacctctcctccctgaagatgctttcctc 260
Query: 61 aagtgttttcctcatgggagtgaggtaagtaagtaaccaatacacaggactagaggcaaa 120
||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 aagtgtttttctcacgggagtgaggtaagtaagtaaccaatacacaggagtagaggcaaa 320
Query: 121 aatgggaaacataacattaccctttatggctctttggaagggccacgatgtgtgcgggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgggaaacataacattaccctttatggctctttggaagggccacgatgtgtgcgggaa 380
Query: 181 gtaaggccttt-ttgggtccattttatgttttcagaaaacaatattgcaatttagtgtgt 239
||||||||||| |||| |||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 381 gtaaggcctttattgg-tccattttattttttcagaaaacaatattacaatttagtgtgt 439
Query: 240 gcatgttcttttgtgtatttgcacatgtatagaggtcaaaggactgttggcgggagtcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcatgttcttttgtgtatttgcacatgtatagaggtcaaaggactgttggcgggagtcag 499
Query: 300 ttctcttcttccaccacggaggtctcagggatcagacccaggtgttcag-tttggcagca 358
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 500 ttctcttcttccaccacgtaggtctcagggatcagacccaggtgttcaggtttggcagca 559
Query: 359 agttcctttacacaccgagccatcttaccgggctccggacataactctgatgtggacata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agttcctttacacaccgagccatcttaccgggctccggacataactctgatgtggacata 619
Query: 419 actctcatatgacgtggaagaggtaacagtanagaagactcaactccagttcctgggact 478
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 620 actctcatatgacgtggaagaggtaacagtaaagaagactcaactccagtttctgggact 679
Query: 479 caatta 484
||||||
Sbjct: 680 caatta 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
