XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTTATGG
TTCCAGGGGTATATTCTTCCCATGGTCTTGCTCTTTTTGTAGAGAACTGT
TACTTCTATGATCACTTCCTTTTTTTCTTGTAAAGAACTATAATTGTTTT
CCTTACTTCTTGCAGAGTACTTTTATTAGTCTGGTGGCATCAAGGTCCTC
TGTTAGAGAAATCTTCTGTATCTGAAGGTCGATACATGAATGAAGGTGGC
TTTTTTAACAGGATATGGGGGGTTCCGGGACTCCGCCGAAAGTAGTCTGC
ACAAGTGAGAGTGTGCACTACAGAAGCTAACAGCTTTTAGGACAGGCGGG
AGCCACAGAGCTTCTGAGGCAGTGCCCTTTTCGGGCTCCAGACATCCGGC
CACCTTTCCATCCAGAGGATAGGTGTCTGCGCAGCCCTAGAGGGCTTTGC
CTCAGCATTAGCGGGAAACATCTTGGTTCCGAGACTCTGCCGAAAGTAGT
CTGCACAGGTGAGAGTGTGGACTACAGAAGCTAACAGCTTCTGGGACAGG
CCAAAGCAACACAGCTTCTGGGAAAGGTCCTGTTTTGGGCCTTCATCATC
GGCCNAGAAGGAGGTTTGAATGCCAGATATCTGTGCACCTTCCCTGGTAG
AGGAAGATTGCCTGCAAAGATGCTCTGACCATTGAACTCAGAGAGAGAGC
TAGTCTCCCGGTCTGCTGACGGAGGGAAAGAAATCCCCCAAGACCATCT

NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTAGCAAGAGAACCATGAGATGGGCAGTTGCTGCAT
GAGGCTCACCATGGAGGCAGCAAGAGTAGCCAGATGATGATTTGTTCTTA
AATATTTCCCACAGTAATACTATGTACTTTCTTTGACTGATGTATCAATA
TCTTCTTGGTATCTACTATGCCAGAATTCTCTCTTTGATCTCTAGTATTT
TGTTGGTTTCTGTAGCTCCTGGTCTTTTTCCTAAGTTGTCCATCTCCAGG
TTTGCCTTGCTTTCTGCTTTATTGTTTCTATTTCTACCTTTAGTTCTTGG
ACCTTTTTGTTCATCTGCTTTATTGTGTTTTCCTGTATTTCTTTAATGGT
TTTATTTGTTTCTTCTTTAAGGGCTTCTACCTGTTTGCCTGTGTTTTCCT
ATATTTGTTTAGGTTAATTATTTATATCCACCTTAAATGCCTTTATCATC
TTCATGTGATAGGATTTTAGGTCGGAATCTTGCCTCTCTGATATGTTTGG
GTATTCAGGGCTTGCTGTAGTGTCCGAACTGAGTTCTGATGATGCCAAAT
TGCATTGGGGTCTATTGGTTATGACTGTGGGCTTGCTTCTGGCCATCTGG
TTCTTTTTTGTGGTAAAAGGGCCGGGNGGCCCTGCTTGGAATTGGCCTCC
TTGAAAACGGAAAAGCTTATAACTAAATTAAAACTGGTTTTCTTTTAAAA
AAAAAGAGTTCTCCTTTAAAA

Query= MSMg01no425_k22.b1 MSMg01no425_k22.b1 CHROMAT_FILE:
MSMg01no425_k22.b1 PHD_FILE: MSMg01no425_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:58 2005
         (543 letters)



>mm_chr3_16334041_16334983
          Length = 943

 Score =  919 bits (475), Expect = 0.0
 Identities = 523/539 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttatggttccaggggtatattcttcccatggtcttgctctttttgtagagaa 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttatggagccaggggtatattcttcccatggtcttgctctttttgtagagaa 264

                                                                       
Query: 65  ctgttacttctatgatcacttcctttttttcttgtaaagaactataattgttttccttac 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgttacttctatgatcacttcccttttttcttgtaaagaactataattgttttccttac 324

                                                                       
Query: 125 ttcttgcagagtacttttattagtctggtggcatcaaggtcctctgttagagaaatcttc 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 ttcttgcagagtacttttattagtctggtggcatcaaggtcttctgttagagaaatcttc 384

                                                                       
Query: 185 tgtatctgaaggtcgatacatgaatgaaggtggcttttttaacaggatatggggggttcc 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtatctgaaggtcgattcatgaatgaaggtggcttttttaacaggatatggggggttcc 444

                                                                       
Query: 245 gggactccgccgaaagtagtctgcacaagtgagagtgtgcactacagaagctaacagctt 304
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggactccaccaaaagtagtctgcacaagtgagagtgtgcactacagaagctaacagctt 504

                                                                       
Query: 305 ttaggacaggcgggagccacagagcttctgaggcagtgcccttttcgggctccagacatc 364
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctaggacaggcgggagccacagagcttctgaggcagtgcccttttcgggctccagacatc 564

                                                                       
Query: 365 cggccacctttccatccagaggataggtgtctgcgcagccctagagggctttgcctcagc 424
           | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagccacctttccagccagaggataggtgtctgcgcagccctagagggctttgcctcagc 624

                                                                       
Query: 425 attagcgggaaacatcttggttccgagactctgccgaaagtagtctgcacaggtgagagt 484
           || ||||| |||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 625 atcagcggaaaacatcttggttccgagactccgctgaaagtagtctgcacaggtgagagt 684

                                                                      
Query: 485 gtggactacagaagctaacagcttctgggacaggccaaagcaacacagcttctgggaaa 543
           ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 685 gtggactacagaagctaacagctcctgggacaggccaaagcaacacaacttctgggaaa 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)