Query= MSMg01no425_l15.b1 MSMg01no425_l15.b1 CHROMAT_FILE:
MSMg01no425_l15.b1 PHD_FILE: MSMg01no425_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:01 2005
(638 letters)
>mm_chr3_59961936_59962974
Length = 1039
Score = 1207 bits (624), Expect = 0.0
Identities = 633/636 (99%), Gaps = 1/636 (0%)
Strand = Plus / Plus
Query: 4 ggaattccacgtatatgcaagatggaaagatcttataaaatagaaaatgtgataaataaa 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacgtagatgcaagatggaaagatcttataaaatagaaaatgtgataaataaa 263
Query: 64 aaa-cctttcagaaaaatatttatagatctttatcatatcagctgagccaacctcagtaa 122
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 264 aaaacctttcagaaaaatatttatagatcttcatcatatcagctgagccaacctcagtaa 323
Query: 123 aaacatagaagattattttattttcagtattgaatgtgggaatgatatgcaggtatgtgc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaacatagaagattattttattttcagtattgaatgtgggaatgatatgcaggtatgtgc 383
Query: 183 tgatacagttaaattagactatagacagtttcagtggaataaaagtgttaagggatcaaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgatacagttaaattagactatagacagtttcagtggaataaaagtgttaagggatcaaa 443
Query: 243 ttgtatattaaaatatttggaaaatttggctgaatgctaagaaattttactggaagatga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgtatattaaaatatttggaaaatttggctgaatgctaagaaattttactggaagatga 503
Query: 303 tgtcatcctgaagataagggaaggtgggtagtaagagattcaagaaggagccttctaaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtcatcctgaagataagggaaggtgggtagtaagagattcaagaaggagccttctaaaa 563
Query: 363 taccctagtaattgattcagatgatagacagaattgactggatttggataatgttggctt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taccctagtaattgattcagatgatagacagaattgactggatttggataatgttggctt 623
Query: 423 aagctgaactttcagtgttgcctactgtgataatgatgataaaactgaatatatctttac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagctgaactttcagtgttgcctactgtgataatgatgataaaactgaatatatctttac 683
Query: 483 tgaagaaaacagatgttttacatttacatgcttggcatactacactcatgtaatggtcaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgaagaaaacagatgttttacatttacatgcttggcatactacactcatgtaatggtcaa 743
Query: 543 gtgttaaaacaaaatgttttaatggtaaaaagactaaaggtaaaaggagataattgtgaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtgttaaaacaaaatgttttaatggtaaaaagactaaaggtaaaaggagataattgtgaa 803
Query: 603 caagttatcagtaaatgatggttcccattgcttagt 638
||||||||||||||||||||||||||||||||||||
Sbjct: 804 caagttatcagtaaatgatggttcccattgcttagt 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space: 646212
Effective search space used: 646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_l15.g1 MSMg01no425_l15.g1 CHROMAT_FILE:
MSMg01no425_l15.g1 PHD_FILE: MSMg01no425_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:01 2005
(544 letters)
>mm_chr3_60080813_60081756
Length = 944
Score = 961 bits (497), Expect = 0.0
Identities = 506/509 (99%), Gaps = 2/509 (0%)
Strand = Plus / Minus
Query: 1 agatcggcagtccaggtatgacgcatctgtgaactgagacctaaagatgagctggagtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agatcggcagtccaggtatgacgcatctgtgaactgagacctaaagatgagctggagtta 449
Query: 61 ggcacactaaggatacatttgtgtagatctcatggaaaacaaaagtcaaaaaaggacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggcacactaaggatacatttgtgtagatctcatggaaaacaaaagtcaaaaaaggacaga 389
Query: 121 acttagcttccagtaaatttgaaaggccagaaactgttgggacttgaatacaaagggagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acttagcttccagtaaatttgaaaggccagaaactgttgggacttgaatacaaagggagg 329
Query: 181 cacgattgagccatagagaacctggagggttaggttatggctcttataatgtactccaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cacgattgagccatagagaacctggagggttaggttatggctcttataatgtactccaag 269
Query: 241 ttagtcagggtgtgaatggctggattggggcacaatatcacaatcctctgttaaaaaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttagtcagggtgtgaatggctggattggggcacaatatcacaatcctctgttaaaaaatg 209
Query: 301 cagtttgccaaaaattcaaatgacagcagatgcct-gcgaggatgtggagaaagaggaac 359
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 208 cagtttgccaaaaattcaaatgacagcagatg-ctggcgaggatgtggagaaagaggaac 150
Query: 360 actcctccattgttggtgggattgcaagcttgtacaaccactctggaaatcagtctggcg 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 149 actcctccattgttggtgggattgcaagcttgtacaaccactctggaaatcagtgtggcg 90
Query: 420 gtttctcagaaaattggacatggtactaccggaggatcccgcaatacctctcctgggcat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 gtttctcagaaaattggacatggtactaccggaggatcccgcaatacctctcctgggcat 30
Query: 480 atatccagaagatgttccaactagtaaga 508
|||||||||||||||||||||||||||||
Sbjct: 29 atatccagaagatgttccaactagtaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
