Query= MSMg01no425_m18.b1 MSMg01no425_m18.b1 CHROMAT_FILE:
MSMg01no425_m18.b1 PHD_FILE: MSMg01no425_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:06 2005
(627 letters)
>mm_chr3_110750370_110751395
Length = 1026
Score = 1127 bits (583), Expect = 0.0
Identities = 616/627 (98%), Gaps = 1/627 (0%)
Strand = Plus / Plus
Query: 1 atgaccctgaaattctactttacaccaatcagaatggcaaaggtcaaaactcaagtgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaccctgaaattctactttacaccaatcagaatggcaaaggtcaaaactcaagtgaca 260
Query: 61 acacatgttggggagaatgtagtgaaagagaaacattcctccattgctggtgggagtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacatgttggggagaatgtagtgaaagagaaacattcctccattgctggtgggagtgca 320
Query: 121 aacttgtacaagcactctggaaatcaatttggctgtttctcagaaaattgcaaatagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttgtacaagcactctggaaatcaatttggctgtttctcagaaaattgcaaatagttc 380
Query: 181 tacctgaagacccagctatactgctactgggcatatacccaaaagatggctcaccatatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tacctgaagacccagctatactgctactgggcatatacccaaaagatggctcaccgtatg 440
Query: 241 acaagaatcaatttcaatttaaataggataattaagcagggcaataatgtgcttaagagt 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaagaatcaatttcagtttaaataggataattaagcagggcaataatgtgcttaagagt 500
Query: 301 ggaattttgctcctgtggtgaccaatcctaagagaacattattcagttggataaaagaat 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 ggaattttgctcctgtggtgaccaatcccaagagaacattattcagttggataaaagaat 560
Query: 361 aagaagtttaataaggtaacataccactctcacactgcaacatccaatatattctgattt 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaagtttaataatgtaacataccactctcacactgcaacatccaatatattctgattt 620
Query: 421 cttgccaaaaaaacaaatgtttaatttgagatagctttcatctttcgggtaataacaata 480
|||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct: 621 cttgccaaaaaa-caaatgtttaatttgaggtagctttcatcttttggataataacaata 679
Query: 481 attattttactttttaagtgtctgattctgtcttgatttatatcaatgttctaaaagttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attattttactttttaagtgtctgattctgtcttgatttatatcaatgttctaaaagttt 739
Query: 541 taaagtctttaagaaattaattcataaagcaaaaagttttaaaaatatataaatatgtaa 600
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 740 taaagtctttaagaaaataattcataaagcaaaaagtttaaaaaatatataaatatgtaa 799
Query: 601 tgacatacctatatatcatctctaaat 627
|||||| ||||||||||||||||||||
Sbjct: 800 tgacatgcctatatatcatctctaaat 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1026
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1016
Effective search space: 626872
Effective search space used: 626872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_m18.g1 MSMg01no425_m18.g1 CHROMAT_FILE:
MSMg01no425_m18.g1 PHD_FILE: MSMg01no425_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:06 2005
(510 letters)
>mm_chr3_110840602_110841510
Length = 909
Score = 932 bits (482), Expect = 0.0
Identities = 503/510 (98%), Gaps = 1/510 (0%)
Strand = Plus / Minus
Query: 1 tttgatacatcactgaccatgtttgagcaataataaataattaactatagtgaagaagta 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 709 tttgatacatcactgaccatgtttgagcgataataaataattaactatagtgaagaagta 650
Query: 61 ctgaatggagttataactttaaacatggtactcaaggacaatagaatgttctatatagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ctgaatggagttataactttaaacatggtactcaaggacaatagaatgttctatatagca 590
Query: 121 aactatggatgtaaacccagcactcttggttttatatacatctaagatttttctgatata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aactatggatgtaaacccagcactcttggttttatatacatctaagatttttctgatata 530
Query: 181 aaacaggatagtatctttatcgattgagggacaatcaatgtattacaaacagaatattgt 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 529 aaacaggatagtatctttatcgattgagggataatcaatgtattacaaacagaatattgt 470
Query: 241 attacatcataattctttatcataagcacaggttggaacagagatctcaagccttccatt 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 attacatcaaaattctttatcataagcacaggttggaacagagatctcaagccttccatt 410
Query: 301 cctattatcttgataaaagttgaaaaaagatatttctagatatatggagtatcagaaaaa 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 409 cctattatcttgataaaagttgaaaaaagatatttctagatataaggagtatcagaaaa- 351
Query: 361 tcaaacaatttaaagccaaaagaacaattaggagatcatcccagagtggaagataattac 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 350 tcaaacaatttaaagccaaaagaacaattaggagatcattccagagtggaagataattac 291
Query: 421 agagtatctaaataaaatgagaaaggttgtaagtgaaaataatagcctgctattactgct 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 290 agagtatctaaataaaatgagaaaggttctaagtgaaaataatagcctgctattactgct 231
Query: 481 tcatttttaacttgctatctacttatcatt 510
||||||||||||||||||||||||||||||
Sbjct: 230 tcatttttaacttgctatctacttatcatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 909
Length adjustment: 10
Effective length of query: 500
Effective length of database: 899
Effective search space: 449500
Effective search space used: 449500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
