XXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATGCGCGGAATTCTTTGTTC
TTTCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCAC
CTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAG
GATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTG
ACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTT
GTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATT
TTTTCCCTGTGTCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATA
AGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTT
GACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATG
ATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTC
CACTGGATGATTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTG
TGGGTTCATTTCTGGGTCTTCAATTCTCTTCCATTGGTCTACTTGTCTGT
CGCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGC
TTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAG
AAGTTTTGCTATCCTCGGGTTTTTGTTATTCACATGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTTTTTAGTCAAAGTACGATTGGATCTAGAAAGGA
CCAGTCATCAATGTAAGCAAGTGAAATACTTGTCATAATTAGATGACAAG
GAAGAAGTCAATAAAGAAAGTGATTAAGAGTTAAAAGCAAAGGAGTAGGT
GTTTTCAAACCATACAAGTTACCTAAGAGGTCCATTTCCATCATGGGAAG
TGTAGACATTGTTGCATATTGGGGATAAGGGGCAAGGTGCAACTCAAACA
AAGCATTCCAGAGACTAATGTTCTCACTGACTTTATGATGGTTGTACAAT
TTATATAATTTATCCACACTGCCATTTTTAAAGCGTAAGTTGAGGATGCC
AACAAATACTAAGACTACACAAAGTTTACATTCAATTTAGCAACCTATTA
AGATCAACACAGCACCTGGCATAAATACCTATGCCCTAACATAATACCAA
ATACTGTAAACAAATTATATTTCTATCTCCTTTGATAGCAACGTCCTGAT
TTCTTTCAATTAAATACCTCGAACATTTAGTANAGATATCCAAAACACTG
GTTTCTATGAAGATCTTACTTAGATTCCTGATCTTAAGATGACACAGGTA
AGGTAGAAATATCTAGAAATCAAGACNAATGAACAACTCTTTTTATGAGA
GAATATATTTTTTTCCATTTTTATTANGGATTTAGCTCATTTACATTTTC
CACGCG

Query= MSMg01no425_o13.g1 MSMg01no425_o13.g1 CHROMAT_FILE:
MSMg01no425_o13.g1 PHD_FILE: MSMg01no425_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:15 2005
         (519 letters)



>mm_chr3_117048341_117049259
          Length = 919

 Score =  770 bits (398), Expect = 0.0
 Identities = 485/522 (92%), Gaps = 23/522 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttttagtcaaagtacgattg-gatctagaaaggaccagtcatcaatgtaagcaagtg 59
           |||||||| ||||||||| | || ||||||||||||||||||||||||||| ||||||||
Sbjct: 864 tgtttttattcaaagtac-aatgtgatctagaaaggaccagtcatcaatgtgagcaagtg 806

                                                                       
Query: 60  aaatacttgtcataattagatgacaaggaagaagtcaataaagaaagtgattaagagtta 119
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 805 aaatacttgtcataattagatgacaaggaagaaggcagtaaagaaagtgattaagagtta 746

                                                                       
Query: 120 aaagcaaaggagtaggtgttttcaaaccatacaagttacctaagaggtccatttccatca 179
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 745 aaagcaaaggggtaggtgttttcaaaccatacaagttacctaagaggtccatttccatga 686

                                                                       
Query: 180 tgggaagtgtagacattgttgcatattggggataaggggcaaggtgcaactcaaacaaag 239
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 685 tgggaagtgtagacattgttgcatattggggatgaggggcaaggtgcaactcaaacaaag 626

                                                                       
Query: 240 cattccagagacta-atgttctcactgactttatgatggttgtacaatttatataattta 298
                   |||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 --------agactaga-gttctcactgactttatgatggttgtacaatttatataattta 575

                                                                       
Query: 299 tccacactgcca-tttttaaagcgta-agttgaggatgccaacaaatactaagactacac 356
           |||||||||| | |||||||||| || | ||||||||||||||||||||| |||||||||
Sbjct: 574 tccacactgc-agtttttaaagcataca-ttgaggatgccaacaaatacttagactacac 517

                                                                       
Query: 357 aaagtttacattcaatttagcaacctattaagatcaacacagcacctggcataaatacct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aaagtttacattcaatttagcaacctattaagatcaacacagcacctggcataaatacct 457

                                                                       
Query: 417 atgccctaacataataccaaatactgtaaacaaattatatttctatctcctttgatagca 476
           ||||||||||| |   |    ||||||||||||||||||||||||| |||||||||||||
Sbjct: 456 atgccctaacaga---c----tactgtaaacaaattatatttctatatcctttgatagca 404

                                                     
Query: 477 acgtcctgatttctttcaattaaatacctcgaacatttagta 518
           |||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 403 acgtcctgatttctttcagttaaatccctcgaacatttagta 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)