Query= MSMg01no425_p01.b1 MSMg01no425_p01.b1 CHROMAT_FILE:
MSMg01no425_p01.b1 PHD_FILE: MSMg01no425_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:17 2005
(350 letters)
>mm_chr3_71315170_71315917
Length = 748
Score = 623 bits (322), Expect = 0.0
Identities = 335/340 (98%), Gaps = 2/340 (0%)
Strand = Plus / Plus
Query: 7 gaattctcagcactctggatgctgccatgttttcagccttgatgagaatgggcagaacct 66
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctcagcaccctggatgctgccatgttttcagccttgatgagaatgggcagaacct 266
Query: 67 cttaatctgaaagtcagccccaattatattctgtccctcataagagttgcattggtcttg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cttaatctgaaagtcagccccaattatattctgtccctcataagagttgcattggtcttg 326
Query: 127 gtgtctcttcaaagcaataaaaactcttactaagacagtcaaaaaactagatttcacatt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtgtctcttcaaagcaataaaaactcttactaagacagtcaaaaaactagatttcacatt 386
Query: 187 taaaaaaaaaaaagaatgaaaaaataacgcccttttcttagaccaagatgtgccaccatg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 --aaaaaaaaaaagaatgaaaaaataacgcccttttcttagaccaagatgtgccaccatg 444
Query: 247 ctacagagttgttaaattaaagaaaatctgactatgtactttatgttaaaatgaataatt 306
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 ctacagagttgttaaattaaagaaaatctgacaatgtactttatgttaaaatgaataatt 504
Query: 307 ttaaatcaccaaaatgactatgattttacacatttcctca 346
|||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 ttaaatcaccaaaatgactaggattttacacatttcctca 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 748
Length adjustment: 9
Effective length of query: 341
Effective length of database: 739
Effective search space: 251999
Effective search space used: 251999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_p01.g1 MSMg01no425_p01.g1 CHROMAT_FILE:
MSMg01no425_p01.g1 PHD_FILE: MSMg01no425_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:18 2005
(498 letters)
>mm_chr3_71490197_71491094
Length = 898
Score = 886 bits (458), Expect = 0.0
Identities = 487/500 (97%), Gaps = 11/500 (2%)
Strand = Plus / Minus
Query: 1 aaataaaaatcaattaaaatgtatatatatatatatatatatatacatatatatatatac 60
||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 539 aaataaaaatcaa-tataatgtatatatatatatatatat------atatatatatatac 487
Query: 61 attcacatataatatcttcagttaacagggtatcataatgtagagataaaatagtattgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 attcacatataatatcttcagttaacagggtatcataatgtagagataaaatagtattgt 427
Query: 121 attttctatcagaaatcacacttataaatttatttgatgtaatttattgtatccagtaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 attttctatcagaaatcacacttataaatttatttgatgtaatttattgtatccagtaac 367
Query: 181 ctcattaacttatatgtctaatatgttcaaatttaaattttaaaagatcaatagttctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctcattaacttatatgtctaatatgttcaaatttaaattttaaaagatcaatagttctta 307
Query: 241 aattgtgtaaaatgtcttttaaaaatattgagtacatttaattaattatgtttttcttta 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aattgtgcaaaatgtcttttaaaaatattgagtacatttaattaattatgtttttcttta 247
Query: 301 aatactaattaatccttttttataaattataacaaaatattcaaaa-gatctataaatga 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 246 aatactaattaatccttttttataaattataacaaaatattcaaaaggatcta-aaatga 188
Query: 360 gtcatgtcattaaatgtaatgcatgtaagttaaaaggtcctgaattctaagaacttttat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gtcatgtcattaaatgtaatgcatgtaagttaaaaggtcctgaattctaagaacttttat 128
Query: 420 aatatttagatagctcactgtaataaa-agtaagaatttatatttaagcaacccaaaatc 478
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 127 aatatttagatagctcactgtaataaata-taagaatttatatttaagcaacccaaaatc 69
Query: 479 taagcttagtgagataacaa 498
||||||||||||||||||||
Sbjct: 68 taagcttagtgagataacaa 49
Score = 62.6 bits (32), Expect = 6e-14
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 18 aatgtatatatatatatatatatatatacatatata 53
|||||||||||||||||||||||||||| |||||||
Sbjct: 484 aatgtatatatatatatatatatatatatatatata 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
