BAC Information

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BAC

Clone NameMSMg01-426F23
Chromosome3 (Build37)
Map Location 96,153,528 - 96,153,780
singlet/doubletsinglet
Overlap genenone
Upstream geneSetdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
Downstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426F23.T7 (MSMg01no426_f23.b1)MSMg01-426F23.TJ (MSMg01no426_f23.g1)
ACCAG519830AG519831
length784759
length of high quality
(start - end)		254 (71 - 324)459 (77 - 535)
definitionCHROMAT_FILE: MSMg01no426_f23.b1 PHD_FILE: MSMg01no426_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:53 2005CHROMAT_FILE: MSMg01no426_f23.g1 PHD_FILE: MSMg01no426_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:53 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCTAAGATGCCCGAGAATTTCATTTAAACACAGCTGTAGGAACA
GCAAACGGTAAAGCAGTTTTGAAACCGGTTAATGTTAATAAGCCTACAGA
GGGAAATGAAATGCTAATTGACAGCAGGAGGGCAGGTCCAGAAGCCGGGT
GTTTTCTTGAGAACCTGAGCTGTCTGTGGTGTTAGAGTGGGGAGTGATCT
ATGTACATAAAGGGTGCTTAGGGCTTCGGTGTCCGTGCCCGCTTTGGAAT
CGCGGGGAATTTCACGGTGTGGGTTATTAGCGCAGGTCTCGCGGGGCGGA
GCAGAGGAACAACGTAAAAGCGTGTCCGGTTAGGCTCTCCAGCGTGCATT
GTAAAGTGGCGGTGCGTTCGGAGCGCGGAGCTAAAGAGGCTGAAGATAAT
AAAACAAAAACAAAAACTTAAGTACTCGGCGGGAAAACACTGTTATACGG
TGTGGGGTGTGGATCCTCTATGAAGAGACTCTTTTATTGCATCTGGGAAG
GGCCGAATTCCTTGCACTCCTCTAAAACCATGAAACCGGCATCCTTGACT
TTGGATCATATCAAAGCTGTTTTCGCATTTTTTCTTCATATTCTGGCCCA
ATCCATTTTTTCTTGGGATTTTTTTTTTACAACTTTTACTTCGACTTTGT
TATTTTCCCGGTTTTCATTTTTTATCATCCCTTCCCCTCTCTTTTATCCG
CACTTACTCCTCTCCTTACTTTTCTTCCCCTTCT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCCTCAGGACAATTGAATATC
ATTGTTCTAAAAACAGATGTGTGAGACCAGACGAGGCTGAGGCAAGTTCT
ACAAACAATTTTTTAAAAACTAAAAAGGGGCCAAAAATGAATATTTTGGC
AAACTTCTATAGAAGATCAAAGGCCCAAGCTTAAAATATTACTAAACACT
ATTGAGATTGAAGGAATGGTGGTCACTGGAGCAGAGGTCACCATTATCTC
TCCAAAATCTTGGCCTTCAGATTGGCCACTTCAAGAAGTAGACATCCTGT
TTCAAGGAGTTGGACTTTATTCCGAATAAAGCAAAGCACCAGATGTTTTA
AATGTACAAGGCCTGAGGGCCAGATAGGAAAATTAAGGCCATATGTGGCT
GATATAGCCATAAACTTATGGGGAATAGATCTGTTACAACAGTGGAAAAC
ACAACTTAATATCCCTCAGTTTCATAGGTCAGCCACAAAACCTGTCAGGC
TCCTAATTTTAAAAAAATCAAATTAGTTAAGGAACGTTATCAAAGACGGT
TACAAACTGTCCAGGCTGCCCATAAACAAGACAAGGCAGAGGCTGACAAT
TCCACTCTACCTCCAGGAGCCAGGGCGGATCAACATCAGCAACCCCCCCA
AAGGGGTTGAATGGACCACCCCCTTGGGTTAACCCGGGGCTCCCCCAAGA
AAAAAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_f23.b1 MSMg01no426_f23.b1 CHROMAT_FILE:
MSMg01no426_f23.b1 PHD_FILE: MSMg01no426_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:53 2005
         (254 letters)



>mm_chr3_96153328_96153981
          Length = 654

 Score =  482 bits (249), Expect = e-140
 Identities = 252/253 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatttcatttaaacacagctgtaggaacagcaaacggtaaagcagttttgaaaccggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatttcatttaaacacagctgtaggaacagcaaacggtaaagcagttttgaaaccggtt 260

                                                                       
Query: 61  aatgttaataagcctacagagggaaatgaaatgctaattgacagcaggagggcaggtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgttaataagcctacagagggaaatgaaatgctaattgacagcaggagggcaggtcca 320

                                                                       
Query: 121 gaagccgggtgttttcttgagaacctgagctgtctgtggtgttagagtggggagtgatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagccgggtgttttcttgagaacctgagctgtctgtggtgttagagtggggagtgatct 380

                                                                       
Query: 181 atgtacataaagggtgcttagggcttcggtgtccgtgcccgctttggaatcgcggggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtacataaagggtgcttagggcttcggtgtccgtgcccgctttggaatcgcggggaat 440

                        
Query: 241 ttcacggtgtggg 253
           ||||||| |||||
Sbjct: 441 ttcacggcgtggg 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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