ACATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCG
CGGAATTCTGTGGTTTACCATTTTTTTTTCCTATTTGACATCTCCACTGT
GCTGTGTGTTGTCCTGTGTGCATCTATAATTTGATGGAAATTTTCAAATT
TTCAACTAGGAACATGTGCACTTTAGCTATAATGTTAGCTTTCACTACAT
CCTCACCACAGTTTGTCCTTTGTGGCTATAAAATGCAAGGCATTATGTGG
CTTGGTATCTGGATGATATGCACAGTCATGGAAAAAAAGTAGTTAATATT
ATTGCTGGTATTCATTAACTCATGTGTTTGTACAAATCTCCTAGCTAAAG
TAAAATGGGCTTCATTGAGGAACAAGGAAAGAAATCTCATCATGTTCTTT
TACATAGTTCTTTAGTAGTGCTTATCACCACTAGCAATTATCTTTTCCTC
TTAGTTAAAAAGATTCTAAAGTCATAAAATATATGCCTTCTATATTTTAG
AGAGAAATTGAAGATTATTTAGCACACAGATTTTCTTGTCTCTCATGTTT
AATATTATATAAAATTATTGCGAAAAAATTTTCCGAAATGTTGGAATAAT
AAAAATATTTTTGAATGTCTTATGCAACTTTTAAGTAAGGTCCTAATTTA
TATAAATTTTTTTACACACTTTGACATGTATTGGTTGAAAATTACTTGGG
AAATAAATTCCTACTACAAATCTTTTACTCCTTCCTCCTCTCCCTTCTTA
TCTCTATCCTTCT

CCATGCTATGNNTANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAACAAAGAACATAATGAGTAAATAGC
TTAGTGAATAGACATAGATCTCATTTCAGTAGTTGGAGTACAAAGGATCA
ATAAGCATATGATTAAACNCTGTAACTCATAGTCCANNNANNGGTTTTAC
CCGGNCCCCCCCTTCCGTTTTTTCCCCGCCCTTCGGATAGTCTATAAGAG
GGGTGGGGCGGGGAGGGGGTGGGGGGGGGGGGGGGGGGTNNTTCTTTTTT
TGGNTTTTTTTATAGAGAAAGATTAANNNACCCCTTCCCCCCCCCTCCTC
GGCTTTATTTGGGGGGTGGGGGGGGGGGGGGGGCGGGGGGGGGCGGGGGG
GGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGNNNNNNNNNNNNNN
CCNNNNNNNNNNNNNNNNTNNNNTCTNTNCTNCCCTTCTTTCGGGGAGGG
CAATAAACTAANCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNCNCCC
CCCCCNNCCCCCCNCNCCCCCCCNCCCNNNNNNNNNCNNNCNCCCNNNCC
NCCCNCCNCCCCNCCNCNCNNNNCCNCCCNCCCCCCCCCCCCNNNNNNNN
CCNCCNNCCCCCCCCCCCNCCCCCCCCNCCCCCCNNNNNNNCCCCCCCCC
NNCNNNNCNNNNNNTTTTTCTTCTNCTCNNCCTCCCCCTTCCTTTCCCNC
CTTCTTTTTTTCTCCTCCCTTCCTTTNTCTCCTTCCCTCTTTTCCTTCTC
CCCCCCCCTATTTTGTCTGTTCGTCG

Query= MSMg01no426_n20.b1 MSMg01no426_n20.b1 CHROMAT_FILE:
MSMg01no426_n20.b1 PHD_FILE: MSMg01no426_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:33 2005
         (473 letters)



>mm_chr3_71349516_71350388
          Length = 873

 Score =  841 bits (435), Expect = 0.0
 Identities = 459/467 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctgtggtttaccatttttttttcctatttgacatctccactgtgctgtgtgttgt 66
           |||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gaattctgtggaataagatttttttttcctatttgacatctccactgtgctgtgtgttgt 614

                                                                       
Query: 67  cctgtgtgcatctataatttgatggaaattttcaaattttcaactaggaacatgtgcact 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cctgtgtgcatctataatttgatggaaattttcaaattttcaactaggaacatgtgcact 554

                                                                       
Query: 127 ttagctataatgttagctttcactacatcctcaccacagtttgtcctttgtggctataaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttagctataatgttagctttcactacatcctcaccacagtttgtcctttgtggctataaa 494

                                                                       
Query: 187 atgcaaggcattatgtggcttggtatctggatgatatgcacagtcatggaaaaaaagtag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atgcaaggcattatgtggcttggtatctggatgatatgcacagtcatggaaaaaaagtag 434

                                                                       
Query: 247 ttaatattattgctggtattcattaactcatgtgtttgtacaaatctcctagctaaagta 306
           ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |||
Sbjct: 433 ttaatgttattgctggtattcattaactcaggtgtttgtacaaagctcctagctaacgta 374

                                                                       
Query: 307 aaatgggcttcattgaggaacaaggaaagaaatctcatcatgttcttttacatagttctt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaatgggcttcattgaggaacaaggaaagaaatctcatcatgttcttttacatagttctt 314

                                                                       
Query: 367 tagtagtgcttatcaccactagcaattatcttttcctcttagttaaaaagattctaaagt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tagtagtgcttatcaccactagcaattatcttttcctcttagttaaaaagattctaaagt 254

                                                          
Query: 427 cataaaatatatgccttctatattttagagagaaattgaagattatt 473
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cataaaatatatgccttctatattttagagagaaattgaagattatt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)