BAC Information

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BAC

Clone NameMSMg01-427E04
Chromosome3 (Build37)
Map Location 51,249,059 - 51,249,478
singlet/doubletsinglet
Overlap geneNarg1
Upstream geneEG621304, LOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1
Downstream geneRab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427E04.T7 (MSMg01no427_e04.b1)MSMg01-427E04.TJ (MSMg01no427_e04.g1)
ACCAG520504AG520505
length765743
length of high quality
(start - end)
137 (138 - 274)426 (79 - 504)
definitionCHROMAT_FILE: MSMg01no427_e04.b1 PHD_FILE: MSMg01no427_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:05 2005CHROMAT_FILE: MSMg01no427_e04.g1 PHD_FILE: MSMg01no427_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTTCATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGA
TCCGCGGAATTCTAAAATGTTCCTAAGCTATAGACAGGGAAAGGGGCATG
GGGTAGTCGGACGATGGATCGGAAGAGAAGCTTTAAAATGCTGTGTTAAT
AACCTCAGCATGTGTTGCCGCAAAATACCCAAAATAATAAACTTTAAAAA
CAACAAGGTATGTTGGTGCATACCTTTAATCCTAGTACGTGGGAGGCAGG
AGTCAGGTGGGTCTCTGAGTTTGAGGAGAGCCTGGTCTATAGAGTGAGTT
CCAACGCAGCCAGAGCTACACAAAGACCTTGTCTTGAAGTCTAAAAAGAA
AAAAAGAAGAAAAAAAAGAAGAGGAAAACCGAAACTTTATTCTTCAGAAT
TACAAATATGTCTACCATGAACTATGATCATATGTGTGCCTCATTCCTCC
TCCAGTTGCCCCTGAATCCCCACAACATGCCCACTTCCCAACTTCATGTC
CTTTTAAAAACATAACTCATTAAGTCCAGTGAGTGCATTCCCATCCACCA
GGACACAGGAAATCCCACCCGTGGCCACATTCACTGAAAACAAATGAACT
CCTCCCTTCCCCTTGGGAAACCGATCACCCTGCCAAGAAAACTCCCCCTA
AAAAAAGGCGCTGGACCCCTTGGAATTACACCATCTATTTAACCCCCATT
ACTACCTATATGTAATTTTCCCTGCTCCGTATACCCTTTGTGACTCCCGA
AATTATCATCGTAAA
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGTCTTAATTTTTACCACAT
TCTGAAATTCTCTTGACAATATTGCTTAATTCTAGAGATTTAATTGCTTA
TCACATGTGAAATATTTAGAAGTCACAAGAACATAAGTCCTTAGTAAATA
ACCATTTTTAGTTATTTGATACAAGCACAGGTAGAGAGTAATTTTTGAAA
ATAAAACTAGCCAGATGGTGGTGGTCCAAGCCTTTCTTTAACCCTGGCAC
TTTGAAGGCAGAGGCAGGGGGATCTCAGATGCCAATCTGGTCTACAGAGT
GAATTCCAGGACAGCCAGAACTATACAGAAAATCCTTTCTTAATAGAAAG
CAGAAAAATAATAGAAATCTTAAACCTTTGGCAAATGGAAGCTAATTAGC
AACATGGAAATCCTAGGTATTGTTTCACGCTGTTGTGACTTTGGGAATTA
TAAAATTTGGGGGNAGGNGGGGGAAAAAAAAACCACAGNGGGTTGTGTTT
TTTTNTNNTTNNTTTTTTNNTTTATCCTTTTTTTTCCTATTCCATCATTT
TTCTCCCTCTCTCTTTCTCTTCTTCCTTTTCTCGCGTCTTTTCCCTCTTT
TCCATTCGTCCCCTCCCATCTCTCTTTATTTTCCTCCTTATTTCTCCCTC
TCTGGNCTTATTATCTTGTTTTCGATTTTTTCCTTTCTCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_e04.g1 MSMg01no427_e04.g1 CHROMAT_FILE:
MSMg01no427_e04.g1 PHD_FILE: MSMg01no427_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:05 2005
         (426 letters)



>mm_chr3_51248853_51249678
          Length = 826

 Score =  791 bits (409), Expect = 0.0
 Identities = 418/421 (99%), Gaps = 2/421 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   ttaatttttaccacattctgaaattctcttgacaatattgcttaattctagagatttaat 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttaatttttaccacattctgaaattctcttgacaatattgcttaattctagagatttaat 266

                                                                       
Query: 67  tgcttatcacatgtgaaatatttagaagtcacaagaacataagtccttagtaaataacca 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgcttatcacatgtgaaatatttagaagtcacaagaacataagtccttagtaaataacca 326

                                                                       
Query: 127 tttttagttatttgatacaagcacaggtagagagtaatttttgaaaataaaactagccag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tttttagttatttgatacaagcacaggtagagagtaatttttgaaaataaaactagccag 386

                                                                       
Query: 187 atggtggtggtccaagcctttctttaaccctggcactttgaaggcagaggcagggggatc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atggtggtggtccaagcctttctttaaccctggcactttgaaggcagaggcagggggatc 446

                                                                       
Query: 247 tcagatg-ccaatctggtctacagagtgaattccaggacagccagaactatacagaaaat 305
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcaga-gaccaatctggtctacagagtgaattccaggacagccagaactatacagaaaat 505

                                                                       
Query: 306 cctttcttaatagaaagcagaaaaataatagaaatcttaaacctttggcaaatggaagct 365
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 506 cctttcttaatagaaagcagaaaaataataaaaatcttaaacctttggcaaatggaagct 565

                                                                       
Query: 366 aattagcaacatggaaatcctaggtattgtttcacgctgttgtgactttgggaattataa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aattagcaacatggaaatcctaggtattgtttcacgctgttgtgactttgggaattataa 625

            
Query: 426 a 426
           |
Sbjct: 626 a 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)