BAC Information

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BAC

Clone NameMSMg01-427E05
Chromosome3 (Build37)
Map Location 40,947,247 - 40,947,756
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427E05.T7 (MSMg01no427_e05.b1)MSMg01-427E05.TJ (MSMg01no427_e05.g1)
ACCAG520506AG520507
length752758
length of high quality
(start - end)		562 (51 - 612)516 (82 - 597)
definitionCHROMAT_FILE: MSMg01no427_e05.b1 PHD_FILE: MSMg01no427_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:05 2005CHROMAT_FILE: MSMg01no427_e05.g1 PHD_FILE: MSMg01no427_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTAACCTTTTCATCTTGAATGGCCAAGAAGTACCTAAAGA
AATGTTCAACATCCGTAGTCATCAGGGAAATACAAATAAAAATGACCCTG
AGATTCCACCTCACACCAATCAGAATGGCTAAGATAAAAAACACAGGTGA
CAGCAGATGCTGGTGAGTATGTGGAAAGAGAGGAATACTGCTCCATTGCT
GGTGGGACTCCAAGCTGGTAAAACTACTTTGGAAATCAATCTGATGGTTC
CTCAGAAAATTGGAATTAGTTCTACCTGTTTATCCAGCTATATCACTCCT
GGGCATATACCCAAAAGATGCTCCAACATATAACAAGGACACATGCTCCA
CTATGTTTATAGTAGACTTATAACAGTCACAAGCTAGAGAGAACCCAGAT
GAAGAGTGGATACAGAAAATGTCATATATTTACGTAATAAAGTACTTACT
CAGCTCTTACAAATGATTTCATGAATTTTGCAGGCAAAGGGATATAATAA
GAAAATATCCTGAGTGAGGTAACCCAGACCCAAAAGGTCACACATGGTAT
TTACTCACTGATAAAGAGATATTAGCCCAAAAGGTCAGAATACTCATTGA
TAAAACTCACAGACCATATGAAGCTTGACTAGAAGGAAGACCCAAGTGTA
AATGCTTCCATCCTACTTAGAAGGAGGAACAAATAATTCCAGTATGCGGA
AG

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAAAACAGACTGTGACAG
TTGAAAGTATGGACAGATTTAATCACCCCCTACGCAAACTTTTTTTTTTT
AAAGGAAAGAATAATAACTCGTCTTTAAATATTTATTCTGGAGTTTAGGT
CAAGGTCTTAAGACTAAACAAAACAATATGTTTCAACACTGCTGCCTTGG
GCCGTTCTTCATTCAAATGTCTTATGCTGCAAACTTGTCTCTTGGAGAAG
AAACTGTTATCACAAAAGAGACAGTGAGTGAAAGTCTCAGACCTACCACA
ATACTGTGACCTGAGATCCTTTCCCATGGAGAAAGTCACTGCTTCCTTTG
AGCTACAGAGCCTTTCCTACAAATGATTCTTTCTGACATCAAAAAAGAAA
GAATGATCATTCACCTTATATTTGCTGGCATAGAGTTATTTTGATGTTGA
AAAAAATAGAAAGAACATCTTCAAGAACAGTCTCCACTGCAGCTATAAAC
CTGTAAAAATTCTCCTAGAAGAAGAAAACTGTCCATTGTGATCAGCAGCA
GTGAGCCAGCTGACTTGTCCACAGATACCCAGTGGCACAATAGAGCACCA
CTTATCTAACCAGAAATCACCCTCAGCACTGGGGTGATAAGTGGGTCAGA
AGTCCCAAATGTCCCCTTAAAGATGCCACTAAAACTTAAGGGGGAAGAAA
AAAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_e05.g1 MSMg01no427_e05.g1 CHROMAT_FILE:
MSMg01no427_e05.g1 PHD_FILE: MSMg01no427_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:05 2005
         (516 letters)



>mm_chr3_40947047_40947956
          Length = 910

 Score =  905 bits (468), Expect = 0.0
 Identities = 502/516 (97%), Gaps = 6/516 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaaacagactgtgacagttgaaagtatggacagatttaatcaccccctacgcaaactt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  
Sbjct: 710 tgaaaacagactgtgacagttgaaagtgtggacagatttaatcaccccctaggcaaac-- 653

                                                                       
Query: 61  tttttttttaaaggaaagaataataactcgtctttaaatatttattctggagtttaggtc 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 652 tttttttttaaaggaaagaataataacttgtctttaaatatttattctggagtttaggtc 593

                                                                       
Query: 121 aaggtcttaagactaaacaaaacaatatgtttcaacactgctgccttgggccgttcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aaggtcttaagactaaacaaaacaatatgtttcaacactgctgccttgggccgttcttca 533

                                                                       
Query: 181 ttcaaatgtcttatgctgcaaacttgtctcttggagaagaaactgttatcacaaaagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ttcaaatgtcttatgctgcaaacttgtctcttggagaagaaactgttatcacaaaagaga 473

                                                                       
Query: 241 cagtgagtgaaagtctcagacctaccacaatactgtgacctgagatcctttcccatggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cagtgagtgaaagtctcagacctaccacaatactgtgacctgagatcctttcccatggag 413

                                                                       
Query: 301 aaagtcactgcttcctttgagctacagagcctttcctacaaatgattctttctgacatca 360
           |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 412 aaagtcactgcttcctttgagcaacagagtctttcctacaaatgattctttctgacatca 353

                                                                       
Query: 361 aaaaagaaagaatgatcattcaccttatatttgctggcatagagttattttgatgttgaa 420
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 352 aaacagaaagaatgatcattcaccttatatttgctggcatagagttatttggatgttgaa 293

                                                                       
Query: 421 aaaaatagaaagaacatcttcaagaacagtctccactgcagctataaacctgtaaaaatt 480
           ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aaaaatagaa----catcttcaagaacagtctccactgcagctataaacctgtaaaaatt 237

                                               
Query: 481 ctcctagaagaagaaaactgtccattgtgatcagca 516
           |||||||||||||||||||| |||||||||||||||
Sbjct: 236 ctcctagaagaagaaaactgcccattgtgatcagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 910
Length adjustment: 10
Effective length of query: 506
Effective length of database: 900
Effective search space:   455400
Effective search space used:   455400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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