BAC Information

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BAC

Clone NameMSMg01-427F15
Chromosome3 (Build37)
Map Location 88,071,846 - 88,072,182
singlet/doubletsinglet
Overlap genenone
Upstream geneCd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg
Downstream gene1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427F15.T7 (MSMg01no427_f15.b1)MSMg01-427F15.TJ (MSMg01no427_f15.g1)
ACCAG520573AG520574
length735793
length of high quality
(start - end)
495 (83 - 577)166 (79 - 244)
definitionCHROMAT_FILE: MSMg01no427_f15.b1 PHD_FILE: MSMg01no427_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:12 2005CHROMAT_FILE: MSMg01no427_f15.g1 PHD_FILE: MSMg01no427_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCAATTAGTCCTCATGTCACNNNNNGANTCNCTTTTCGAAGAGGATC
CGCGGAANNCCTCCATGCCCAAACATCTGAAACCACAGCGGGTGCTCAGG
GTTTCAGCTCGTGGTCACGTTTTGCTTATCAACCACGTCACTTAAAGTAG
CCAGTCATGTAAGAGTGTGATACCGAGCTCCACCCTCTCAGAGTGAAGCA
TGGGACCCTGTTGTGTTAGTGTACTGGCTAGTTTTGTGTCAACTTGACAC
AGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCAT
GAGATCCAACTGTAAGGCATTTCCTCTATTAGTGATCAAGGGGGAAAGGC
CCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGA
GAGCAGGCTGAGCAAGCCAGTAAAGAACATCCCTCCATGGCTTCTGCATC
AGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTG
ATGAACAGCAGTATGGAAGTGTAAACTGAATAAACCCTTCCCTCCCCAAC
TTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGAC
AGTTAGGAATAAAAAATGCGGGACCGGGCTGTCGAGATGGTTCAGTGGTT
AAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAAC
CTCATGGGTGTTCTCTAACCTTTCGTAAGGAGAAC
NCCCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGGATCCCTCTGCCTCTGC
CTCCTCTGCCTCTGCTGGGATTAAAGGCATGTCCCACCATGCTCAGCTGT
TTTCTATAAAAATACAGACATATTGTAAGACTGTGCTTTCATTTTATCCC
AGGTGTAGGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNNTNN
NNNNTTTTTTTNTTTTTNNTTTTNNTTTTTTTTTTNTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTNNNTTNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTCCNNNTTTTTTTTTTTTTTTTTTTTCTATT
TTTTATTCTTTATTTTTTTTTTTTTTTTTTATTTTTTTTTCTTTTTTCCT
TTCTTTTCTTCCTTTTTCTCCCCTTTCTCTTCTTCTTCTCCTCCTTTTCT
TTCTTTTTTTTTTTCTCTCACCCTATCTTCTATCACACAATCCATTCCTC
CTCCTCTTATATATATTTTTTCCCCCCTCTCCTCTATTTTTTCATCTTCC
ATATTCTACACTCACTATATATACCTCCCTTAAAAAATTATATATTTCTT
CAATTATTCATCCTTTAAATTCCAATTCCACCCATTACTCAATCCCATTA
CATATTCCACTTTCTCCTCTCTCTACCCCCCCTTATTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_f15.b1 MSMg01no427_f15.b1 CHROMAT_FILE:
MSMg01no427_f15.b1 PHD_FILE: MSMg01no427_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:12 2005
         (495 letters)



>mm_chr3_88071846_88072740
          Length = 895

 Score =  605 bits (313), Expect = e-177
 Identities = 331/337 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   cacagcgggtgctcagggtttcagctcgtggtcacgttttgcttatcaaccacgtcactt 61
           ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 337 cacagcgtgtgctcagggtttcagctcgtggtcacgttctgcttatcaaccacgtcactt 278

                                                                       
Query: 62  aaagtagccagtcatgtaagagtgtgataccgagctccaccctctcagagtgaagcatgg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 277 aaagtagccagtcatgtaagagtgtgataccgagctccaccctctcagattgaagcatgg 218

                                                                       
Query: 122 gaccctgttgtgttagtgtactggctagttttgtgtcaacttgacacagctggagttatc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaccctgttgtgttagtgtactggctagttttgtgtcaacttgacacagctggagttatc 158

                                                                       
Query: 182 acagagaaaggagcttcagttgaggaaatgcctccatgagatccaactgtaaggcatttc 241
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 acaaagaaaggagcttcagttgaggaaatgcctccatgagatccaactgtaaggcatttc 98

                                                                       
Query: 242 ctctattagtgatcaagggggaaaggccccttgtgggtgggaccatctctgggctggtag 301
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  ctcaattagtgatcaagggggaaaggccccttgtgggtgggaccatctctgggctggtag 38

                                                
Query: 302 tcttgggttctataagagagcaggctgagcaagccag 338
           ||||||||||||||||| |||||||||||||||||||
Sbjct: 37  tcttgggttctataagaaagcaggctgagcaagccag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)