BAC Information

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BAC

Clone NameMSMg01-427H21
Chromosome3 (Build37)
Map Location 8,954,908 - 8,955,227
singlet/doubletsinglet
Overlap geneTpd52
Upstream geneLOC633072, LOC545500, LOC620966, Stmn2, Hey1, LOC100039504, Mrps28
Downstream geneLOC100041389, LOC667886, Zbtb10, Zfp704, Pag1, LOC621504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427H21.T7 (MSMg01no427_h21.b1)MSMg01-427H21.TJ (MSMg01no427_h21.g1)
ACCAG520679AG520680
length771771
length of high quality
(start - end)		419 (79 - 497)443 (81 - 523)
definitionCHROMAT_FILE: MSMg01no427_h21.b1 PHD_FILE: MSMg01no427_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:23 2005CHROMAT_FILE: MSMg01no427_h21.g1 PHD_FILE: MSMg01no427_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAG
GATCCGCGGAATTCCATTACAAATCCCAATTTCCAAATATCTTTCCACAA
ATCCAGCCGTTCAAAGGATAATAAAGGGAAAACTCCAACACAAGGAGGGA
AACTACACCCTAGAAAAAGCAAAGTAATCCTTCAACAAACCTAAAAGAGG
ACAGCAGCAAGAACAGAATCCCAACTCTAACAAGAAAAATAACAGGAAGT
AACAATTACTTTTCCTTAATATCACTTAATATCAGTGGACTTAATTTCCC
AATAAAAAGACATAGACTAATAGACTGGCTACATAAACAGGACACAACAT
TTTGCTGCGTACAGGAAACCCAGCTCAGGGACAAAGATATACACTACCAC
AGAGTAAAAGGCTGGAAAAACAATTTTCCAAGCAAATGGTCTGAAGAAAC
AAGTTGGAGTAGCCATTCTAATATCGAATAAAATCGATTTTCAACCAAAT
GTTATCAAAAAAGACGAGGAGGAGTACTTCATACTCATCAAAGGTAAAAT
CTTTCAAGATGAACTCTCAATTCTAAATATCAATGCTTCAAAAGCAAGGG
CATCCACATTCATTAATGAAACTTTAGAAAGCTCAAACACACACTGCACT
GCACCCGAAATAATGGGAAACTTTAAAACCCCCTCTTTATCATGACAGAT
CCCGGAAACGAAACTAATCCAAGACCTTTGACCTTACCAAATTTGGAACA
AATGGGGTTATTGAATTCCCA

NNNNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGATTTTAGAAATTAG
ATTAAAATATGTATTTGTTTTCTTGTTGCTGGTGATAAATACCCGAGAAA
AGCAGCGTGAGGCGGGAAGGATGCACTTCAGGTCAGCGGTTGAGAGGTAA
CACTTGGGCTTGGTGTTAGCACGAGGTGGCGGGTCCTAACTGCATCCGTA
GTCGGGAAGCCAAGAGCACAGAAGCAGGTCAGGCTATGAACCCCCAAGCA
CCCCACTCCCGACACTTCCTTTGTTGAGGCTCTGTCTTCTAAAAGCTCCA
TGACCTATCAGAAACAGCCATCAGATAGGGGCCAAAGGTCCAGACATAAA
AGCAATAAAGCCCATGTACGATATCTGACACTGAAACCTTAATAAAATAG
AATTGAGGGGCTTGGTGGCTTCTTTAGGTTTTCTACCTGATGTTTTAGCT
GGGCAGGGCAGGGGGATCTGAAGACACTGATGGCCACTCTGTTTAGTAAT
GTGGTCTTCATAGCANGCTCTGTTCAGAGAATGATACAGTGGGTTTGGGA
GTCTCCATGGTTGTCGTTGTGGCCCGTCTCCTAAAAAGGGGGCTCCCTGT
CCCCCCCGGCGGGTTGGAAATTTTAGCTCTCCTGGCCCAAACTCCCTGGG
ATGGGATTGCAGCCCCGGTTTCTTTGTATCCCGGGGAGGGAAAGCTTTAA
AAAAATTTACTTTCCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_h21.g1 MSMg01no427_h21.g1 CHROMAT_FILE:
MSMg01no427_h21.g1 PHD_FILE: MSMg01no427_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:23 2005
         (443 letters)



>mm_chr3_8954385_8955227
          Length = 843

 Score =  588 bits (304), Expect = e-172
 Identities = 316/320 (98%)
 Strand = Plus / Minus

                                                                       
Query: 124 ttgggcttggtgttagcacgaggtggcgggtcctaactgcatccgtagtcgggaagccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ttgggcttggtgttagcacgaggtggcgggtcctaactgcatccgtagtcgggaagccaa 784

                                                                       
Query: 184 gagcacagaagcaggtcaggctatgaacccccaagcaccccactcccgacacttcctttg 243
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 783 gagcacagaagcaggtcaggctatgaacccccaagcaccccactcctgacacttcctttg 724

                                                                       
Query: 244 ttgaggctctgtcttctaaaagctccatgacctatcagaaacagccatcagataggggcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ttgaggctctgtcttctaaaagctccatgacctatcagaaacagccatcagataggggcc 664

                                                                       
Query: 304 aaaggtccagacataaaagcaataaagcccatgtacgatatctgacactgaaaccttaat 363
           |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 663 aaaggtccagacataaaatcaataaaccccatgtatgatatctgacactgaaaccttaat 604

                                                                       
Query: 364 aaaatagaattgaggggcttggtggcttctttaggttttctacctgatgttttagctggg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aaaatagaattgaggggcttggtggcttctttaggttttctacctgatgttttagctggg 544

                               
Query: 424 cagggcagggggatctgaag 443
           ||||||||||||||||||||
Sbjct: 543 cagggcagggggatctgaag 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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