BAC Information

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BAC

Clone NameMSMg01-427K09
Chromosome3 (Build37)
Map Location 156,421,202 - 156,611,277
singlet/doubletdoublet
Overlap geneNegr1, LOC668853
Upstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik, LOC100041152
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427K09.T7 (MSMg01no427_k09.b1)MSMg01-427K09.TJ (MSMg01no427_k09.g1)
ACCAG520798AG520799
length766766
length of high quality
(start - end)		461 (79 - 539)504 (83 - 586)
definitionCHROMAT_FILE: MSMg01no427_k09.b1 PHD_FILE: MSMg01no427_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:34 2005CHROMAT_FILE: MSMg01no427_k09.g1 PHD_FILE: MSMg01no427_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,421,202 - 156,421,656)(156,610,774 - 156,611,277)
sequence
TTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGA
TCCGCGGAATTCTCAGCTTCTCGTCAAGCCCGTGCTGTCACCTGTGGTCA
CTTAAACAAAACTACCAGGTTTTATTTTCTTCTCCCTGACACAGCTTCCA
CATCTCCACCCTGAGGTTGGGTGCCTTCATATTCCAGTGTCTATTGAAGT
CTATTCCTCAGAAATCATTTAATGAAACTTGTATCTAAGGTAGATCCATA
GTGTTGTTTTACTTTACCATCAGGCACGTATTTAATAACATGATGTAAAC
TGTGCTATGGTTTAGTTACTGAACATTTTGCTGTTTGCTTTCTTGAAGAG
TAAAACTAGCTTACAGGATTTGAGCCAGGTCATATAAAGACACTAATTGT
GGAGTCCTGACTCTGGGATATTTTGTTTTGTTCCTATATGATTGTTTCCT
GACTTGATTTAATTTTTCACTGTCTCCAGCATGTGATCAAGGCATTANAG
AACTGGATTTCTGAGTGAGTGTCTGCTAACCTTGAAGGCATAGGGCTCAG
GATTATAGTTTGTAAAATGCTTTAGATAAAATCTTGTATATTAAAACTAA
TCCCTGTCAACCCCAAATACTGAGGATTCTGTGCTCCACCCTTTGGAATG
TTAACAAAAACTGGTTTCTTGTTTTTTTTTTCTCCCCCATTCTGGTCAGT
ATATTTGTTTATGGTCCTTCTCTGTAAAAACTTTGACCTCCTTAAAGTAA
ATAGCGTGGAGTCCGG

NNNNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCTCTTTCAGAGGTA
AGCATTTACAAACAGGGAAGTGCATTCACTATCCTCACACACTGGCAAAG
AGAAAATTCTGAGGCAAAGACTTGTTATTGAATAAAGGGCACAATTCTAT
AAGTAAGCTCTCTCTGGCTCATGTGACCTGTGCTGTGGAAGGTATTTAGC
ATGCAACCAAGGCAGAGTTCTGAGATACCACAGAGCCATGCTATGCAGAT
ACGGAGAGGGATGAAACACATTCAGACAGGGAAGACAAGGGAACTCTTGG
GATGGTGAACAGGCAGATAAAAAAATGCAGCAGAGGGGAACATCCAGCTG
GGCCTCTCAGACAAGTGAAAGCCTGGTGTACAAGGACTAGGACATCAAGT
AGGGATACATTTTCTCAGATGGGAAGCACATGGCTCTGGGTGGCAGAAGT
GGGCATGACAGGAGCCTAGAAGGTTTGGATGGCTGGATTTGCATGAGTGT
AGAAGACAGGCTGCTACCACAGCACCATTCGAACCAGTCTGCAGCCATCC
CGAGCCTCCATGACTGCGACCACAGAGGAAAGAGCAGAGAGAAAGGCCTT
GAAAGACAGTTCCAAGGCAAAATGACAAGACTCCATGGACGGGGTTGATA
GTAAGCTTGGAATGAGAAGGGAAAATTACCAAAAAGTGGGGGAAAACAGG
GTACACTCTCGTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_k09.b1 MSMg01no427_k09.b1 CHROMAT_FILE:
MSMg01no427_k09.b1 PHD_FILE: MSMg01no427_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:34 2005
         (461 letters)



>mm_chr3_156420998_156421858
          Length = 861

 Score =  820 bits (424), Expect = 0.0
 Identities = 447/455 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgctgtcacctgtggtcacttaaacaaaactaccaggttttattttcttctccctgacac 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgctgttacctgtggtcacttaaacaaaactaccaggttttattttcttctccctgacac 264

                                                                       
Query: 65  agcttccacatctccaccctgaggttgggtgccttcatattccagtgtctattgaagtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcttccacatctccaccctgaggttgggtgccttcatattccagtgtctattgaagtct 324

                                                                       
Query: 125 attcctcagaaatcatttaatgaaacttgtatctaaggtagatccatagtgttgttttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attcctcagaaatcatttaatgaaacttgtatctaaggtagatccatagtgttgttttac 384

                                                                       
Query: 185 tttaccatcaggcacgtatttaataacatgatgtaaactgtgctatggtttagttactga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttaccatcaggcacgtatttaataacatgatgtaaactgtgctatggtttagttactga 444

                                                                       
Query: 245 acattttgctgtttgctttcttgaagagtaaaactagcttacaggatttgagccaggtca 304
           |||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 acatttggctggttgctttcttgaagagtaaaactagcttacaggatttgagtcaggtca 504

                                                                       
Query: 305 tataaagacactaattgtggagtcctgactctgggatattttgttttgttcctatatgat 364
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tataaagacagtaattgtggagtcctgactctgggatattttgttttgttcctatatgat 564

                                                                       
Query: 365 tgtttcctgacttgatttaatttttcactgtctccagcatgtgatcaaggcattanagaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||
Sbjct: 565 tgtttcctgacttgatttaatttttcactgtctccagcatgtgatcaaggcagaaaagaa 624

                                              
Query: 425 ctggatttctgagtgagtgtctgctaaccttgaag 459
           |||||||||||||||||||||||||||||||||||
Sbjct: 625 ctggatttctgagtgagtgtctgctaaccttgaag 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no427_k09.g1 MSMg01no427_k09.g1 CHROMAT_FILE:
MSMg01no427_k09.g1 PHD_FILE: MSMg01no427_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:35 2005
         (504 letters)



>mm_chr3_156610574_156611477
          Length = 904

 Score =  920 bits (476), Expect = 0.0
 Identities = 497/504 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgctctttcagaggtaagcatttacaaacagggaagtgcattcactatcctcacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tgtgctctttcagaggtaagcatttacaaacagggaagtgcattcactatcctcacacac 645

                                                                       
Query: 61  tggcaaagagaaaattctgaggcaaagacttgttattgaataaagggcacaattctataa 120
           ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 644 tggcaaagagaaaattctgagacaaagacttgttattgaataaagggcacaaatctataa 585

                                                                       
Query: 121 gtaagctctctctggctcatgtgacctgtgctgtggaaggtatttagcatgcaaccaagg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gtaagctctcactggctcatgtgacctgtgctgtggaaggtatttagcatgcaaccaagg 525

                                                                       
Query: 181 cagagttctgagataccacagagccatgctatgcagatacggagagggatgaaacacatt 240
           |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 524 cagagttctgggataccacagagccatgctatgcagttacggagagggatgaaacacatt 465

                                                                       
Query: 241 cagacagggaagacaagggaactcttgggatggtgaacaggcagataaaaaaatgcagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cagacagggaagacaagggaactcttgggatggtgaacaggcagataaaaaaatgcagca 405

                                                                       
Query: 301 gaggggaacatccagctgggcctctcagacaagtgaaagcctggtgtacaaggactagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaggggaacatccagctgggcctctcagacaagtgaaagcctggtgtacaaggactagga 345

                                                                       
Query: 361 catcaagtagggatacattttctcagatgggaagcacatggctctgggtggcagaagtgg 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 344 catcaagtagggatacattttctcagataggaagcacatggctctgggtggcagaagtgg 285

                                                                       
Query: 421 gcatgacaggagcctagaaggtttggatggctggatttgcatgagtgtagaagacaggct 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 284 gcatgacaggagcctagaaggtttggatggctggatttgcatgagtatagaagacaggct 225

                                   
Query: 481 gctaccacagcaccattcgaacca 504
           ||||||||||||||||||||||||
Sbjct: 224 gctaccacagcaccattcgaacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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