Query= MSMg01no427_o06.b1 MSMg01no427_o06.b1 CHROMAT_FILE:
MSMg01no427_o06.b1 PHD_FILE: MSMg01no427_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:53 2005
(250 letters)
>mm_chr3_54884474_54885123
Length = 650
Score = 406 bits (210), Expect = e-118
Identities = 240/250 (96%)
Strand = Plus / Minus
Query: 1 catttcctgggtctctctgagaactttcttgtgaatttactaagatgcttcttgtcctgg 60
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 450 catttcctggatctctctgagaactttcttgtgaattcactaagatgcttcttgtcctgg 391
Query: 61 ccaggatggcaaactcaggtgagctgtggcacagccctttcctatctgcagctggaaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ccaggatggcaaactcaggtgagctgtggcacagccctttcctatctgcagctggaaagc 331
Query: 121 cactgcagttcccagccgtgtctaagggagtgcctgtgctgggtcctcgggttaagccaa 180
||||||||||||||||| |||||||||||| |||| ||||||| ||| ||||||||||||
Sbjct: 330 cactgcagttcccagccatgtctaagggagcgcctttgctggggccttgggttaagccaa 271
Query: 181 ctcattcagcttccagtggtgtgtttttaaagctttccccatcctgctacagagggatgg 240
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctcagccagcttccagcggtgtgtttttaaagctttccccatcctgctacagagggatgg 211
Query: 241 agcctgagga 250
||||||||||
Sbjct: 210 agcctgagga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space: 154481
Effective search space used: 154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no427_o06.g1 MSMg01no427_o06.g1 CHROMAT_FILE:
MSMg01no427_o06.g1 PHD_FILE: MSMg01no427_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:53 2005
(493 letters)
>mm_chr3_54712856_54713748
Length = 893
Score = 886 bits (458), Expect = 0.0
Identities = 483/498 (96%), Gaps = 14/498 (2%)
Strand = Plus / Plus
Query: 1 tttgaaactaggggctagtaaatgattaataaatgaatctagtcaactccagatatagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaaactaggggctagtaaatgattaataaatgaatctagtcaactccagatatagct 260
Query: 61 gtaaattagatacttgggagtattgatttgagaagtgtgttttccagtcaccactgatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaattagatacttgggagtattgatttgagaagtgtgttttccagtcaccactgatca 320
Query: 121 tacaaaggtgctgaaaggtaccctgaaatgatgcagactagacaagtcggattcgagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaaaggtgctgaaaggtaccctgaaatgatgcagactagacaagtcggattcgagatg 380
Query: 181 taaattataaatgtcatcatccctacaatgagatggatattcttttgcctggatcgctac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaattataaatgtcatcatccctacaatgagatggatattcttttgcctggatcgctac 440
Query: 241 cttaaagctttt-----ggcggggaatagagagaggatgctaattcttcactagaaaagt 295
|| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ct-aaagc----acaaaggcggggaatagagagaggatgctaattcttcactagaaaagt 495
Query: 296 gtgttctcacaatagacttctgaagtcctgcttatccattgtgtgagcacagagtagcag 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 496 gtgttctcacaatagacttctgaagtcctgcttatccattgtgtgagcacagagtagtag 555
Query: 356 aacttgcctgtattctctctctgtctctttgtctctgtctctcgctctcaggagctcaaa 415
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 556 aacttgcctgtattctctctctgtctctttgtctctgtctctc----tcaggagctcaaa 611
Query: 416 agtcttgcttacaaagaaaatagcaacatatcccttgtaatcctgaacaaaatgatacat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agtcttgcttacaaagaaaatagcaacatatcccttgtaatcctgaacaaaatgatacat 671
Query: 476 caggctatctatagagtg 493
||||||||||||||||||
Sbjct: 672 caggctatctatagagtg 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
