BAC Information

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BAC

Clone NameMSMg01-428G04
Chromosome3 (Build37)
Map Location 74,317,795 - 74,317,941
singlet/doubletsinglet
Overlap genenone
Upstream geneBche, LOC667425, LOC619764, LOC667434
Downstream geneLOC100041551, EG667459, BC050789, Serpini2, Wdr49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428G04.T7 (MSMg01no428_g04.b1)MSMg01-428G04.TJ (MSMg01no428_g04.g1)
ACCAG521363AG521364
length779810
length of high quality
(start - end)
166 (76 - 241)144 (79 - 222)
definitionCHROMAT_FILE: MSMg01no428_g04.b1 PHD_FILE: MSMg01no428_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:33 2005CHROMAT_FILE: MSMg01no428_g04.g1 PHD_FILE: MSMg01no428_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAAAAGGAGGCG
CGGAATCTTTGTACTGCTAAGAGCCCCATTTTTAAGGGGATTATTTGATT
TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATATATTGCATATTAG
TCCCCTACCCGATTTGGGATAAGTAAAGATCCTTTCCCAATCTGTTGGTG
GCCTTTTTGTCTTATTGACTGTGTTTTTTGCTTTGCAGAAGCTTTGCCAT
TTTATGAGGCCCCATTTATTGATTCTCGATCTTACAGCACAAGCCATTGC
TGTTCTATTCAGGAATTTTAATTCTTACCCATATCTTTGAGGGTTTTCCC
TACTTTCTCCTCTATAACCCCCAGTGACTCAGGGTTTATGTGGATTTCCT
TAATCCACTTACATTTGACCTTAGTACTCTGGAGACAGATATGGATCTAT
CCTCATTTTTTTACATGATAACTGCCATTTGTGCCTTCATCATTTGATGA
TTATGCTGTCTTCTTTCCTTGCTACGCTTTTATCTTCCTTGTCATACATT
TCCCCGCCCTAATTCGACCGCCTTCATCTTTTTGTTCTCCTCGTATTCCT
GCCCCATTGGCCCCTCTCTGTCTGACCTCCATATCTCCCCTCTTTTCCCC
CTCTTTCATCCCTATTCCTTTTTCTTTTTTGTTATATTACATTATCACCT
TTGCGAAAGTTTTCTTTCTTTTTTTACTCTTATCCCCTTCTTCCCCTTTT
TCCCTTCTGTTTATCTCTTCCTCCCACCN
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATCTTCTGATAATCTTTGA
AAGAATCCTCTCCTGACACCACCATTTTTATAATGCTTTGAGTGGGAAAA
AGTTCAAATAACACTCTGTGTCTCTGTGTCATCTCCCCATGAAGGGCTTT
TTTTTTTCTAACTCTGAACAAAGAATACCAAAACAGATCTTCTGAAGGAA
GAGCTAGAATTCCTTCTATTTCTGTACTGTTTGCGTTCCAGTACGGCGTT
TGATGCGGTAGTAATGAAGTTATTTATTCTCCACAGCCCCTTTTCCATCA
TCTCTAAAGAATTATGTAAATTCCCTTCTTGCATATGATCTTACTATTTT
TTCTGCGCCCTTGTTTGATATCATTCATTGCCATTAACATGTTTCCCGTA
CTTTTATTTTTACCTTTTACCTTTGTATTTTTTCATTCTACCCCTTTTTT
TCCTCTTCCTATTCCTGACCCTCTTCTAACTATATCTCATCTTCCTCTAT
TTCACATTCACGTTATATCCCCCTATCCTTCCTCCCTCTTTTTTTTCTTT
GTTATTCCCCCATTCCTTTCACTTCCCCCATATTTCTCGTCTATTTTTTT
TCTTACCCCTATTTTTTTTTCCCTTTTCCCCACCTATTTTTTTTCCCTTC
TTTTTCTCTTCCTTTTCCTATTTTTTTTTATACTTGACCCGCCCCTTTGC
TCAATTATTTCTTTTTTATCTAGCTATTTATTTTTTTTCTTCCTCCTTCC
CCTTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_g04.g1 MSMg01no428_g04.g1 CHROMAT_FILE:
MSMg01no428_g04.g1 PHD_FILE: MSMg01no428_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:33 2005
         (144 letters)



>mm_chr3_74317595_74318141
          Length = 547

 Score =  253 bits (131), Expect = 3e-72
 Identities = 142/147 (96%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatcttctgataatctttgaaagaatcctctcctgacaccaccatttttataatgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agcatcttctgataatctttgaaagaatcctctcctgacaccaccatttttataatgctt 288

                                                                       
Query: 61  tgagtgggaaaaagttcaaataacactctgtgtctctgtgtcatctccccatgaagggct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 287 tgagtgggaaaaagttcaaataacactctgtgtctctgtgtcatctccccgtgaagggct 228

                                      
Query: 121 ttttttttt---ctaactctgaacaaa 144
           |||||||||   |||| ||||||||||
Sbjct: 227 ttttttttttttctaagtctgaacaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 547
Length adjustment: 8
Effective length of query: 136
Effective length of database: 539
Effective search space:    73304
Effective search space used:    73304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)