BAC Information

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BAC

Clone NameMSMg01-428G17
Chromosome3 (Build37)
Map Location 16,753,923 - 16,754,381
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428G17.T7 (MSMg01no428_g17.b1)MSMg01-428G17.TJ (MSMg01no428_g17.g1)
ACCAG521389AG521390
length749764
length of high quality
(start - end)
459 (71 - 529)560 (76 - 635)
definitionCHROMAT_FILE: MSMg01no428_g17.b1 PHD_FILE: MSMg01no428_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:35 2005CHROMAT_FILE: MSMg01no428_g17.g1 PHD_FILE: MSMg01no428_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAGTCTGCACACCATTTCTGACATTCTCTAGGAATAAATGTGA
AATGTTAATTTCCTTTCCCCCCATGAAAATGAGGCTAAAAATGGCTAGTA
TAGAAATCAGAAGACAAAATGGTTTCCTCTGCATGCCTTCCTGTTCCCTT
GGGTGCCATCCCCTAGAGCCAGGGTATCAGAGCAGGAATTGGGGGTCCCT
GCTCTGATAATTGCCAGTGACTGGAGGGAGCAATCCTCCTCCCACACTCT
CGCCATCCTCCTCCTGTGTTTTTATAATTTACAGTGAAGGTCGAATCAAA
GGGCTTTCTTTATTTTGCCTGTGTGATTTTGATGTTGGACACAGGGAGGC
AGGGCAAAGCAATGGCAGAGAGCAGGCAAAGGAAAAACCCAGCAGCTGTC
CAGGACACACATGCACACTCCCTCCCAGAAGAGAATGCATGGAGCTTCAG
AACTGCCTACTTAACCGCAAGCATTCATTTCGATACGAGAGACACATGAG
ATCATGGCTCCCTATTTTGATTTTTGTCCCCTTAAAGTTATTTCAGGCCT
TCGAGCCTATTTTTCTCGCCATCCTTTTTCTGTAATCCGCTTGGTGTCTT
TGATTGCATATATTACCACTACCTATATATGCTTGCGTATTCCATTTGTG
ATATCCTGTCTATCCCATTACATACTGAATTTCTTTACCCGCTTATTCC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCACAAACCTAAACATAATAAA
GATTATATACAGAAAGCTGATAGGCAACATTAAATTAAATGGAGTGAAAG
TTAAAGCCGTTCCACTAATATCAGGAACAATACTAGGCTGTCTGCTCTCC
AAATACTTATTCAATATATACTTGAAGTTTTGATGGAACAATAAGACAGA
GTATATTGAGGAAATATAAATAGGAAATGAAGAAATCAAATTAAATAATG
ATATTTTATATAAGTGATGCCAAAAGCTCTATCAGGGAACTCCTACATAC
TTCATAATATATAACTTCAGCAAAGTGGCTGGATACAAAATTAACCATAC
AACAAAGAAAAATATTAGGAATACTCCTTTAGACAAATGATAAAGAGATG
ACAAAAATGTAAGGAAAGAAAACCCTTCATAATAGCCAGACATAGTATAA
ATCATCCTAGTGTAACTCTCACCAACAAAGTGAAAGACCTGTATGAAAAC
TTCAAGTCTCTGAATAAATAAATTTAGGAATATATCAGAAGATGAAATGA
CCTCCCCAACATGCTCATGGAAAGATAGTATTAACATAGCACAAATGGCC
ATCTTGCCAAAAATCATCTACAGATTCAGTTTAATTCCCATCTTAATTCA
AAAATAATCTTTTACAAGGTAGGACGGACAATACTCCAATTCTTATGGGA
AAGACAAAAAATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_g17.b1 MSMg01no428_g17.b1 CHROMAT_FILE:
MSMg01no428_g17.b1 PHD_FILE: MSMg01no428_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:35 2005
         (459 letters)



>mm_chr3_16753723_16754581
          Length = 859

 Score =  826 bits (427), Expect = 0.0
 Identities = 451/459 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttctgacattctctaggaataaatgtgaaatgttaatttcctttccccccatgaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttctgacattctctaggaataaatgtgaaatgttaatttcctttccccccatgaaaat 260

                                                                       
Query: 61  gaggctaaaaatggctagtatagaaatcagaagacaaaatggtttcctctgcatgccttc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggctaaaaatgtctagtatagaaatcagaagacaaaatggtttcctctgcatgccttc 320

                                                                       
Query: 121 ctgttcccttgggtgccatcccctagagccagggtatcagagcaggaattgggggtccct 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgttcccttgggtgccatcccccagagccagggtatcagagcaggaattgggggtccct 380

                                                                       
Query: 181 gctctgataattgccagtgactggagggagcaatcctcctcccacactctcgccatcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctctgataattgccagtgactggagggagcaatcctcctcccacactctcgccatcctc 440

                                                                       
Query: 241 ctcctgtgtttttataatttacagtgaaggtcgaatcaaagggctttctttattttgcct 300
           |||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctgtggtgcaataatttacagtgaaggtcgaatcaaagggctttctttattttgcct 500

                                                                       
Query: 301 gtgtgattttgatgttggacacagggaggcagggcaaagcaatggcagagagcaggcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgattttgatgttggacacagggaggcagggcaaagcaatggcagagagcaggcaaa 560

                                                                       
Query: 361 ggaaaaacccagcagctgtccaggacacacatgcacactccctcccagaagagaatgcat 420
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 ggaaaaacccagcagctgcccaggacacacatgcacactccctcccagaagaaaatgcat 620

                                                  
Query: 421 ggagcttcagaactgcctacttaaccgcaagcattcatt 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggagcttcagaactgcctacttaaccgcaagcattcatt 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)