BAC Information

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BAC

Clone NameMSMg01-428I08
Chromosome3 (Build37)
Map Location 158,571,434 - 158,756,811
singlet/doubletdoublet
Overlap geneLOC668905
Upstream geneCth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7, LOC100041008
Downstream geneLOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428I08.T7 (MSMg01no428_i08.b1)MSMg01-428I08.TJ (MSMg01no428_i08.g1)
ACCAG521467AG521468
length834740
length of high quality
(start - end)
190 (120 - 309)238 (77 - 314)
definitionCHROMAT_FILE: MSMg01no428_i08.b1 PHD_FILE: MSMg01no428_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:43 2005CHROMAT_FILE: MSMg01no428_i08.g1 PHD_FILE: MSMg01no428_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,571,434 - 158,571,623)(158,756,574 - 158,756,811)
sequence
GTTCAAAAATTGCGGCGCAAAACGACTCACATACGAAAGAGGATCCGGGA
AATTCATCTTTTCGATACCCTTGGAGTTGTAGGCTGCTCCTGTGGGGCTG
GGAACTAAACTCCAGTCTTCTTCCAAGCACTCTTAACTTCTGAGTCAACT
CTGTCAATTTAGAGAAAGAATGGAGAGATCTAGCCATCACTATTTTTGAT
TGTTTTGATGTAACCTCACTACTTGCTATTCTCAGTCTCTTGGCCTTTAG
TTATAAAACAGTACTATTGACTCCAAGTGTCTCTTTGATGTTTGACTGGG
TGGGTAGGTGTTAGATCATTCTCATAGAGTTGGGCGGGGGGATGGGATAG
TGTTTTTGTCCACCCCCCAACTGCCAAGCGGATCAAATTTGTTTTATTAA
TTCACCTATCCCCTCCCTATCTCTGTTTTCTCTGTCCGTTTTATATTTTC
TCCCCTCTCCTTCCTTTTTGCTTTTTGTTCTCTTTTTGGTTGTTCTTCGT
CGTTCTTTTCTCTTCTTCCCCTCCTCTCTCTCCTTCTTTACTCTCCCCTT
ATTCTCCTCCGTCTCTCTCACATCTTTTTCCCCCACCCCGTTTCTCCCTC
TCCCTTCTTTCGCTATTTTTTACTTATTATTTATATTACCCCTACTATTC
TACTAACTCTCTTCTTTCCATCCATTAATTTTTCCCCTCTTATACTCTCC
TAACCCGCCTCTTTCTTTTTTCCTTTATTATTAACTCCACCACATACCCG
CATTCCTCTTCTATTTCCTTCTCCTTTCTTCTTTCTTTCCCCCTCTTCTC
CGCATTCGTCCGTCTTTTTTCTTTCTCCCCCCCT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCACCAAGTTTATAGATTAAAC
TTGCCACAAGTTTGCCATTCAGCACATTTAGATTTGCTGTGTACATGGAC
TTGGTTATCTATGTGGGATATTTGAGTGTATTCACCCATGCAACTTATAG
AATCTAGCAATGTTTGCATGTTCCCTGTAGATCTACAATCAGTTAGGGTT
GAGGCATGAGAAAGTAGTTCAAGGTAAGATATAGTACTAAAGGTTATTCT
GGTTTACAGAGTTGATATTTATCATTGAGTTACCAGATTCTTTGTTCTGG
CGGTGAGATATTGTACTATCTGAGAAAAAAAGAGGAAGAAACTCCACAAA
TCCATATTTATGTTTCATTAACTGAAAGATATTCAGTGCTACCCCGTGGC
AGGCAACTCTGAACCCTTTCCTCAATTAATCCTCAATATAATGACAATAG
ACACTGACTTGGAACAATCTCTCAGGACCAGGAAATGAATAGAGTTATGC
GTGTTTCATATTTATTCTTCCAAAAAAAACCCTTAGGTAAGTAAGTGATG
AAATAATTCTCTATCTTTTTCAGACCAGGAGACTGCCACCCTTATTTACT
GCGATCCCAGAGCTCCAAAACCTACTGTATATCTGCCCAGTTTGTCTTTC
TCATACCTCACACCCTATTCTGTTCCTTATGCATTGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_i08.b1 MSMg01no428_i08.b1 CHROMAT_FILE:
MSMg01no428_i08.b1 PHD_FILE: MSMg01no428_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:43 2005
         (190 letters)



>mm_chr3_158571234_158571823
          Length = 590

 Score =  368 bits (190), Expect = e-106
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccaagcactcttaacttctgagtcaactctgtcaatttagagaaagaatggagagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttccaagcactcttaacttctgagtcaactctgtcaatttagagaaagaatggagagat 260

                                                                       
Query: 61  ctagccatcactatttttgattgttttgatgtaacctcactacttgctattctcagtctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagccatcactatttttgattgttttgatgtaacctcactacttgctattctcagtctc 320

                                                                       
Query: 121 ttggcctttagttataaaacagtactattgactccaagtgtctctttgatgtttgactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggcctttagttataaaacagtactattgactccaagtgtctctttgatgtttgactgg 380

                     
Query: 181 gtgggtaggt 190
           ||||||||||
Sbjct: 381 gtgggtaggt 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no428_i08.g1 MSMg01no428_i08.g1 CHROMAT_FILE:
MSMg01no428_i08.g1 PHD_FILE: MSMg01no428_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:43 2005
         (238 letters)



>mm_chr3_158756374_158757011
          Length = 638

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcaccaagtttatagattaaacttgccacaagtttgccattcagcacatttagatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cttcaccaagtttatagattaaacttgccacaagtttgccattcagcacatttagatttg 379

                                                                       
Query: 61  ctgtgtacatggacttggttatctatgtgggatatttgagtgtattcacccatgcaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctgtgtacatggacttggttatctatgtgggatatttgagtgtattcacccatgcaactt 319

                                                                       
Query: 121 atagaatctagcaatgtttgcatgttccctgtagatctacaatcagttagggttgaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atagaatctagcaatgtttgcatgttccctgtagatctacaatcagttagggttgaggca 259

                                                                     
Query: 181 tgagaaagtagttcaaggtaagatatagtactaaaggttattctggtttacagagttg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgagaaagtagttcaaggtaagatatagtactaaaggttattctggtttacagagttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)