ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCATCCAGTCCCTCAAATTATGCATCAAGCTATCTATGGATCCACCCA
CCCTTGTTTCCATTTGGCACAATAGCAAAGGGGAATTACATTCTCTTTCA
GGCAGTGGGACACACCTATTCAGTCTTGGTCAGGGAAGACATTACAATTG
ATTCCTTTCACAGAGAGAATAACTTTTACCTTTTAATTCTTAACACAAAT
TCCACTACCCTGTCCCCATACCCTGCATATGTTTCTTGACTCTGGTGTTT
AAGTCACATCTGCATAATGTCTTTGAGCCTGGTCACCATATTAAAAAAAA
ATTACTAGTGCCTGTTCTAGGCTTTGAAATAAACCATGAAAACATACTAA
AGAGTTTGCTTTCACTACAAATCTAGTGTTCGATAGCATATGTATAATGG
GTCAAGGAATTTACTAACTGAAGAAAAAATTCCAAGAGACACCTATAGTC
TTAAGAATTTCCATAGTCATTCTACTGTAGTTGGTAGCAATTTACAGAGG
ACCATACTTTTGCACTGGTCCATCACACAGCAAATAAGCCTCCTATATGT
ATATCAGTACTGGAATTTTTACCCCATCAATTAAAAAAACTGCTCTTAAG
GTGTTTTCTTATGTGTTTCGGTTAGAATGTTCTGAAAAAGATCAACGATG
CTATGGCAACAAAATATCTTCATTACCACGCTTCTTTGATTTTTACCAAA
TCTCTTAATCATTACC

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACGGTGGT
AATGAAGTGTTCCTGTAAAACAGACTGTTGAGAAGGATTCAACTGCGTGA
ATTCAGAACTCTTCAGCTGGGGAACGGTGGTAATAAAGTGTTCCCACAAC
ACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTG
GGGAACAGGGTACCCATAAGTATAGCTTTACAAGGTAAGTCTGGCCTTGA
ACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAG
CTTTACAAGGTATGTTTGACCTTGAACTTTTTCTAGTGTTAGGAGCCTTT
TTGTTCCTTTTCACATGTTATCAAGTGGTTAAGGCAGGGCTGAAAATTCT
GGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAG
GAGCAAAGAAGAAATATGGTACACAAAATAAGTACACAGGCCTTTCCACG
GGTCTTGAACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGA
GATTAGAAGGAAGGAAAAGAATAATAGAACAGAAATAAGATCTCTCAGCG
GAGGTCTCTAGGAGAAAGAGTCTATACTCTCCTCTAGGTGAGCTCTAGGA
GCCAGTTCTTAATATTTGTGAAACATATGAGAAGAATATTATGGCCCGAA
AGGCGCTCTCTTCAGCATGG

Query= MSMg01no428_l20.b1 MSMg01no428_l20.b1 CHROMAT_FILE:
MSMg01no428_l20.b1 PHD_FILE: MSMg01no428_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:00 2005
         (615 letters)



>mm_chr3_76678927_76679944
          Length = 1018

 Score = 1123 bits (581), Expect = 0.0
 Identities = 609/619 (98%), Gaps = 5/619 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattatgcatcaagctatctatggatccacccacccttgtttccatttggcacaatagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 aaattatgcatcaagctatctatggatccacccacccttgtttccatttggcacaatagc 759

                                                                       
Query: 61  aaaggggaattacattctctttcaggcagtgggacacacctattcagtcttggtcaggga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 758 aaaggggaattacattctctttcaggcagtgggacacacctattcagtcttggtcaggaa 699

                                                                       
Query: 121 agacattacaattgattcctttcacagagagaataacttttaccttttaattcttaacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 agacattacaattgattcctttcacagagagaataacttttaccttttaattcttaacac 639

                                                                       
Query: 181 aaattccactaccctgtccccataccctgcatatgtttcttgactctggtgtttaagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aaattccactaccctgtccccataccctgcatatgtttcttgactctggtgtttaagtca 579

                                                                       
Query: 241 catctgcataatgtctttgagcctggtcaccatattaaaaaa--aaattactagtgcctg 298
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 578 catctgcataatgtctttgagcctggtcaccatattaaaaaaataaattactagtgcctg 519

                                                                       
Query: 299 ttctaggctttgaaataaaccatgaaaacatactaaagagtttgctttcactacaaatct 358
           |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct: 518 ttctaggctttgaaataaaccatgaaaacatactgaagagtttgctttaactataaatct 459

                                                                       
Query: 359 agtgttcgatagcatatgtataa-tgggtcaaggaatttactaactgaagaaaaaattcc 417
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 458 agtgttcgatagcatctgtataattgggtcaaggaatttactaactgaagaaaaaattcc 399

                                                                       
Query: 418 aagagacacctatagtcttaagaatttccatagtcattctactgtagttggtagcaattt 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aagagacacctatagtcttaagaatttccatagtcattctactgtagttggtagcaattt 339

                                                                       
Query: 478 acagaggaccatacttttgcactggtccatcacacagcaaataagcctcctatatgtata 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 acagaggaccatacttttgcactggtccatcacacagcaaataagcctcctatatgtata 279

                                                                       
Query: 538 tcagtactggaatttttaccccatcaattaaaaaaactgctcttaaggtgttttcttatg 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcagtactggaatttttaccccatcaattaaaaaaactgctcttaaggtgttttcttatg 219

                              
Query: 598 tgtttcggtt-agaatgtt 615
           ||||| |||| ||||||||
Sbjct: 218 tgttt-ggtttagaatgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1018
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1008
Effective search space:   609840
Effective search space used:   609840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)