BAC Information

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BAC

Clone NameMSMg01-428N04
Chromosome3 (Build37)
Map Location 115,744,218 - 115,744,674
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfm3, EG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2
Downstream geneVcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428N04.T7 (MSMg01no428_n04.b1)MSMg01-428N04.TJ (MSMg01no428_n04.g1)
ACCAG521698AG521699
length768738
length of high quality
(start - end)
246 (78 - 323)493 (84 - 576)
definitionCHROMAT_FILE: MSMg01no428_n04.b1 PHD_FILE: MSMg01no428_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:07 2005CHROMAT_FILE: MSMg01no428_n04.g1 PHD_FILE: MSMg01no428_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGGC
GCGGAATTCTCACCTTAGCAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAACTGGATATAGTACTATTTTTATGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGCAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGTCTTATTTATAATAGTCAGAAGCTGGAAGGAACCC
AGATGCCCCTCAACAGAGGAATGGATACTGAAGACGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTACAAAGAACGAATTTATCGACTTCCCGG
CCAAATGAATGGATCTGTCGGGCCTCTTCCCGACTGAGGCAACACTTCCC
CCCAGTGACTTATCCGATATGCACTCCCTTGATTACTGGTAACCTAGTCC
CATTTCCCAACCACCCTCAATTATCTCCCACTTTTTCTTTCCCTAACCAC
TTGTATACCCCCTTATTAACCCCACCACCTGTATTTTTCTCTCTCTCTAC
CGCTCTTTTTACTTTCCN
TGTTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCAAATGTATTTGG
CAGAGAAAGGTTAAGACTTCCTTCTGGCTCATTGTGTGAGCCATGCATCT
GTTTCACTCTCTTAAGTTGTTTTTTTTCTGTGCACTCCTGCCCTTACTTC
TGTCTGTAAGCCTCAACTGTCACCCTGTGTTCCTCCAAAGCAAACATCCA
TGTGACTTCATGTGCTTCTCAATTGTTCTGACCATTCTTTGGACCCTTCA
CTTTTCACCCAGTCTTAAGATGTAAGAATGTCGTAAGTTCTGATCACCCA
CTTTCCCACCATCAGCAGACACTATTGATCACCCACTTTCCCACCATCAG
CAGACACTATTGAGCAGAGGGTACCGTGCGACCCAGCTTGCTATTGAGCA
CTGACAACTGGCAGCAGTTTGTCATTTGAGGGCGATAGTCAAAAGAGAAG
AAACTTACCTGGGAGTTGCCAAACAGCGTGCGAGTTGCTTTGCTCAGGCT
AAAGTTTATGGCATGTGAATTCCCTGAAGCTCATCAAGCGGTTACCTATA
AAAGAGAGGAAACTCCATTAAAGGACTGAGTTTGCCAAGGTTTGGCAAAA
TCTGTTTGTAAAGCTGTGACTGCATTTTCTGACATTTTTCAAAATTTATA
AACTGTGGAGTGTAAGTCATCTTGGTTCTTCGGCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_n04.g1 MSMg01no428_n04.g1 CHROMAT_FILE:
MSMg01no428_n04.g1 PHD_FILE: MSMg01no428_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:07 2005
         (493 letters)



>mm_chr3_115744180_115745072
          Length = 893

 Score =  775 bits (401), Expect = 0.0
 Identities = 453/493 (91%), Gaps = 37/493 (7%)
 Strand = Plus / Minus

                                                                       
Query: 2   ctccaaatgtatttggcagagaaaggttaagacttccttctggctcattgtgtgagccat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctccaaatgtatttggcagagaaaggttaagacttccttctggctcattgtgtgagccat 436

                                                                       
Query: 62  gcatctgtttcactctcttaagttgttttttttctgtgcactcctgcccttacttctgtc 121
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 435 gcatctgtttcactctcttaagttgttttttttctgtgtactcctgcccttacttctgtc 376

                                                                       
Query: 122 tgtaag-cctcaactgtcaccctgtgttcctccaaagcaaacatccatgtgacttcatgt 180
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgtaagtcc-caactgtcaccctgtgttcctccaaagcaaacatccatgtgacttcatgt 317

                                                                       
Query: 181 gcttctcaattgttctgaccattctttggacccttcacttttcacccagtcttaagatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcttctcaattgttctgaccattctttggacccttcacttttcacccagtcttaagatgt 257

                                                                       
Query: 241 aagaatgtcgtaagttctgatcacccactttcccaccatcagcagacactattgatcacc 300
           |||||||||||||||||                                   ||||||||
Sbjct: 256 aagaatgtcgtaagttc-----------------------------------tgatcacc 232

                                                                       
Query: 301 cactttcccaccatcagcagacactattgagcagagggtaccgtgcgacccagcttgcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 cactttcccaccatcagcagacactattgagcagagggtaccgtgcgacccagcttgcta 172

                                                                       
Query: 361 ttgagcactgacaactggcagcagtttgtcatttgagggcgatagtcaaaagagaagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ttgagcactgacaactggcagcagtttgtcatttgagggcgatagtcaaaagagaagaaa 112

                                                                       
Query: 421 cttacctgggagttgccaaacagcgtgcgagttgctttgctcaggctaaagtttatggca 480
           ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 111 cttacctggaagttgccaaacagcatgcgagttgctttgctcaggctaaagtttatggca 52

                        
Query: 481 tgtgaattccctg 493
           |||||||||||||
Sbjct: 51  tgtgaattccctg 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)