BAC Information

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BAC

Clone NameMSMg01-428O23
Chromosome3 (Build37)
Map Location 25,042,238 - 25,042,511
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635702, EG665189
Downstream geneLOC100039592, Nlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428O23.T7 (MSMg01no428_o23.b1)MSMg01-428O23.TJ (MSMg01no428_o23.g1)
ACCAG521784AG521785
length771787
length of high quality
(start - end)
276 (47 - 322)412 (76 - 487)
definitionCHROMAT_FILE: MSMg01no428_o23.b1 PHD_FILE: MSMg01no428_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:15 2005CHROMAT_FILE: MSMg01no428_o23.g1 PHD_FILE: MSMg01no428_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGAGAAATTGCCCGGAATACTCTATGTGGTATCAGACTGCATTA
GATAAAGCAATTGTATTTCTGAGAAATTCTGAAGTCAGAGATAACTGCTG
ATAGTAAAAAGGGGTGTCGGGGGGCGCTAAAAATCCCCTTTCCATGAAGA
ATTTCTGAGGGATAAAAAGAAAAGAGGAAACCCCTGCTTAACTACCAGTT
TAAAATCCAACCTTTCTTTCGGATCTCCTTTCCCCTGCTACCACTGGGGA
TGGGTCTGCTATCCTGGGACTCATGCTGATGCCTTCAGCACAAAGAGCAC
CCAGGGGGGCAGGGACAGAATTTTGCATCCTATTCCCATCGCTGGTTAGC
ACAGAATATCGCTCGTGGCTGACTGAAGTAAACACTGCGAGTGCCTCGCT
GCGAGAGAAGCAGAGTTTCCTAAGTTTCTTCGCAGCTCGGCTGGACTAAC
GTCTACCCATTAACTTAGTTCAGGGTTGAGCGCCCCTAGGGATGCGGTGC
CCTAAGCAGTGCAGGGAGGTCGGTTGGGCTATGGGTATGTTCGATACCCG
ATCGGTACCTCGTTGATAATGTTCCGATCTCCGTGTTTGTTTGTATATCT
TGCTCCTTTCTTTTTGTTCGCTTGTTTATCCCCCTCCTCCTCGCTCTTTT
TTATCTCCTCAATTTTTCTCTTCTCCCTTTTCCCCTTCCGTCCCTTGTTC
TTTTCCCCCCTCTTTTTTTCG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCATTAATCATCAGGAAAATGCAA
ATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
CCAGTATGGTGGTTCCTCAGAAAATTGGACCTGAGGATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACACATG
CTCCACTATGTTTGTAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATT
TACACAATGGAATACTACTCAGCTANTTAAAATGAATTTATGAAATTCCT
AGGTAATTGGATGGACCTGGAGGGCTTCTTCCTGAGTGAGGTAACCCATC
CCAAAGGAACTCCCCCATATGTACTCCCTGAGAAGGGGATTTTACCCCAA
AACTTTGGATCCCCCAAATAAAAACCACTTTGCGTACCCTTGAATATTCT
TAAAAAAAAAAAACAAAAGGGGGACCTCTTCCCCTCTCCCCATAATGGGA
AAAAAACCCCCTGGGTGGGGTTTTAAAAAAAATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_o23.b1 MSMg01no428_o23.b1 CHROMAT_FILE:
MSMg01no428_o23.b1 PHD_FILE: MSMg01no428_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:15 2005
         (276 letters)



>mm_chr3_25042035_25042711
          Length = 677

 Score =  507 bits (262), Expect = e-148
 Identities = 271/274 (98%), Gaps = 1/274 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgag-aaattgcccggaatactctatgtggtatcagactgcattagataaagc 62
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgagaaaaatgcccggaatactctatgtggtatcagactgcattagataaagc 263

                                                                       
Query: 63  aattgtatttctgagaaattctgaagtcagagataactgctgatagtaaaaaggggtgtc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aattgtatttctgagaaattctgaagtcagagataactgctgatagtaaaaaggggtgtc 323

                                                                       
Query: 123 ggggggcgctaaaaatcccctttccatgaagaatttctgagggataaaaagaaaagagga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggggggcgctaaaaatcccctttccatgaagaatttctgagggataaaaagaaaagagga 383

                                                                       
Query: 183 aacccctgcttaactaccagtttaaaatccaacctttctttcggatctcctttcccctgc 242
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 384 aacccctgcttaactaccagtttaaaatccaacctttccttcggatctcctttcccctgc 443

                                             
Query: 243 taccactggggatgggtctgctatcctgggactc 276
           ||||||||||||||||||||||||||||||||||
Sbjct: 444 taccactggggatgggtctgctatcctgggactc 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 677
Length adjustment: 9
Effective length of query: 267
Effective length of database: 668
Effective search space:   178356
Effective search space used:   178356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)