BAC Information

Click to search

BAC

Clone NameMSMg01-429A13
Chromosome3 (Build37)
Map Location 60,816,897 - 60,817,469
singlet/doubletsinglet
Overlap genenone
Upstream geneAadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
Downstream geneRap2b, LOC666891, LOC669910
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429A13.T7 (MSMg01no429_a13.b1)MSMg01-429A13.TJ (MSMg01no429_a13.g1)
ACCAG521859AG521860
length741735
length of high quality
(start - end)
581 (36 - 616)573 (70 - 642)
definitionCHROMAT_FILE: MSMg01no429_a13.b1 PHD_FILE: MSMg01no429_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:23 2005CHROMAT_FILE: MSMg01no429_a13.g1 PHD_FILE: MSMg01no429_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACCA
GATTTTCAAATAAGAGCTAACCCATTACTCCTCAAACTACTACAAAAGAT
AGAAACTGAGAGCCGGTTATCCAATTCATTTTATGAGGTCACAGTTACTA
TTTTACCCAAGCCACAAAAAGACCCAAAAAAGAAAGAGAATTGCACATCA
ATTTCCCTTATAAACATAGATATAAAAGTTCTTACTGAAATATTTGCAAA
TTAGACTAAGGCTAGATCATCAATGTGATCTCTATCATGATCAAGTAGAC
TTCATTTCGGAGAGAATAAATATATAAATATAATACAACAAATAAACAAA
CTGGAGGACAAAACCCCAAATGATCATCATCACTAGATGAAGAAAAAGAC
CTCTGACAAAACCCAACACCATTAGGCATACAACTGACATACGTCAACAT
AATAAAGTCAGTTTAGAATAATCTCATAGCTAATATCAACTTAAATGTAA
AGAAACACAAAGCAATTCCTCTAAAATAAGGAATAAGACAAAGTTGACCC
CTCTCTCCATATTCAATATAGTACTTTTATGTCTTAGCTAGAACAATAAT
ACAAGTGAAGAATGTCAAGACAATACAAATTAGAAACTACATATCTTATA
GAGGGCTAATACCAATAATATGCAAGGAATTAAAGAGACCTAGATATAAA
GAAAACAAATAATCCAATTAAAAACGGGGTTTGTAATTAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAACATAGCAATAGCAAAAGAAGGATCCAATTGTA
TTACTGAGTCTGACAGTAAAGGCCATTGGAATGCAGAAGATCTATCATGT
GAGTCTGGGACAATAGCCATATCCTTGAGTAGCAGAAAATTGCAAAAGTT
CTATAGGAAGATGGATTTGAAGTTAAGTACAGGACACAATCAGTAAGGGA
TCAGTTAGCAAGAATTGCCTGTCATTATTCCAAAAATCGAGTTTATGTGG
CAGTTGATTAATGTTAAGCAGCAAAGAGCTAGGAGGAGCTTGTCTGGTGT
TCAAGGTAATAAGATAGGAGACATGGTGTTGGCAAGGGAAAAGACTATGG
CTGTATTCTAGAATGCATGTCAGAAAAGCTATACTGAGGGGTGAATTGCT
TCATAAGTTTCTTAAAAGGAGATGGGCAGACAGAGAGTCTGGGTCCAACC
ATTCAAACATTCTGCTCATACTCGCCAGGCATTTGATATACTGGTAGAGG
AGAATAATCAAATCTCCAGCTGGTCCACCTACCCACAACCAGACTTTCTT
CTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCCT
CNCNTCTCNTCNCTTCTCTTCCCTTCTCTTCCCTTCTCTTCTCTTCTCTC
CTCTCCTCTCCTCTCCTCTCCTTTCCCCTCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_a13.g1 MSMg01no429_a13.g1 CHROMAT_FILE:
MSMg01no429_a13.g1 PHD_FILE: MSMg01no429_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:23 2005
         (573 letters)



>mm_chr3_60816697_60817669
          Length = 973

 Score = 1100 bits (569), Expect = 0.0
 Identities = 572/573 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagcaatagcaaaagaaggatccaattgtattactgagtctgacagtaaaggccattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 atagcaatagcaaaagaaggatccaattgtattactgagtctgacagaaaaggccattgg 260

                                                                       
Query: 61  aatgcagaagatctatcatgtgagtctgggacaatagccatatccttgagtagcagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgcagaagatctatcatgtgagtctgggacaatagccatatccttgagtagcagaaaa 320

                                                                       
Query: 121 ttgcaaaagttctataggaagatggatttgaagttaagtacaggacacaatcagtaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcaaaagttctataggaagatggatttgaagttaagtacaggacacaatcagtaaggg 380

                                                                       
Query: 181 atcagttagcaagaattgcctgtcattattccaaaaatcgagtttatgtggcagttgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcagttagcaagaattgcctgtcattattccaaaaatcgagtttatgtggcagttgatt 440

                                                                       
Query: 241 aatgttaagcagcaaagagctaggaggagcttgtctggtgttcaaggtaataagatagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgttaagcagcaaagagctaggaggagcttgtctggtgttcaaggtaataagatagga 500

                                                                       
Query: 301 gacatggtgttggcaagggaaaagactatggctgtattctagaatgcatgtcagaaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacatggtgttggcaagggaaaagactatggctgtattctagaatgcatgtcagaaaagc 560

                                                                       
Query: 361 tatactgaggggtgaattgcttcataagtttcttaaaaggagatgggcagacagagagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatactgaggggtgaattgcttcataagtttcttaaaaggagatgggcagacagagagtc 620

                                                                       
Query: 421 tgggtccaaccattcaaacattctgctcatactcgccaggcatttgatatactggtagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggtccaaccattcaaacattctgctcatactcgccaggcatttgatatactggtagag 680

                                                                       
Query: 481 gagaataatcaaatctccagctggtccacctacccacaaccagactttcttctcttctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagaataatcaaatctccagctggtccacctacccacaaccagactttcttctcttctct 740

                                            
Query: 541 tctcttctcttctcttctcttctcttctcttct 573
           |||||||||||||||||||||||||||||||||
Sbjct: 741 tctcttctcttctcttctcttctcttctcttct 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)