Query= MSMg01no429_a17.b1 MSMg01no429_a17.b1 CHROMAT_FILE:
MSMg01no429_a17.b1 PHD_FILE: MSMg01no429_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:24 2005
(600 letters)
>mm_chr3_58753571_58754570
Length = 1000
Score = 1145 bits (592), Expect = 0.0
Identities = 598/600 (99%)
Strand = Plus / Plus
Query: 1 acagcagaaggacgcacaaaatgaagaaaaccatctccacttccctgggatttggtgtgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 acagcagaaggacgcacaaaatgaagaaaaccatctccacttccctgggatttggtatgg 260
Query: 61 ttgaactttccagaatgtgttctcagtcatgttcaaatgcccagttctgcggtttgcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaactttccagaatgtgttctcagtcatgttcaaatgcccagttctgcggtttgcagg 320
Query: 121 gacaagtctctctcacctgagctcttcggaaggctgtgttagctggatggagggctactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaagtctctctcacctgagctcttcggaaggctgtgttagctggatggagggctactt 380
Query: 181 ctctatgacacggtagagttgaatactttgggaaagacaatgtgatgaagtcctatggcc 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctaggacacggtagagttgaatactttgggaaagacaatgtgatgaagtcctatggcc 440
Query: 241 tgggtattatgccttttccaaatataaagttttaggttatcaaaccttaggtcaaaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtattatgccttttccaaatataaagttttaggttatcaaaccttaggtcaaaatta 500
Query: 301 actctccaaacctttatctctagaaagtatgtaataagccttgctatccctcagaccttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actctccaaacctttatctctagaaagtatgtaataagccttgctatccctcagaccttc 560
Query: 361 aagactcacttccatcttgttctcaacagtccattctgtcacccatattttgaacatgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagactcacttccatcttgttctcaacagtccattctgtcacccatattttgaacatgat 620
Query: 421 catgtatacatatgacttttcttgctgtctttgtacactcgtaacataaatatttctcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgtatacatatgacttttcttgctgtctttgtacactcgtaacataaatatttctcaa 680
Query: 481 gtcctttcaggctatgcacagtgttatccatgttgctagctgttcagttgaacagtgtgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcctttcaggctatgcacagtgttatccatgttgctagctgttcagttgaacagtgtgc 740
Query: 541 caagatgacccttcctttttgattgtcactattgatatacatacctcccattttaacatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caagatgacccttcctttttgattgtcactattgatatacatacctcccattttaacatc 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_a17.g1 MSMg01no429_a17.g1 CHROMAT_FILE:
MSMg01no429_a17.g1 PHD_FILE: MSMg01no429_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:24 2005
(598 letters)
>mm_chr3_58925970_58926967
Length = 998
Score = 984 bits (509), Expect = 0.0
Identities = 577/601 (96%), Gaps = 5/601 (0%)
Strand = Plus / Minus
Query: 1 tgttttcagactgagaacctactggctaatggtacttggtaccaagcctgacatctgagt 60
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 765 tgttttcagactgggaacctactggctaatggtacttggtaccaagcctgaaatctgagt 706
Query: 61 tctgtctccaggaggcaacaaaaggacagcaacttcaacaagttgtcctctgacctcctc 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 705 tctgtctccaggaggcaacaaaaggacagcgacttcaacaagttgtcctctgacctcctc 646
Query: 121 gggaacacaatgatacaagagtcagcacacca--cccacacacacatacacacacataca 178
||||||| || |||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 645 gggaacataaagatacaagagtcagcataccacccccacacacacatacacacacataca 586
Query: 179 tacacacacatgatttttggatctataggtttttctactcagagttatgaagtatcttga 238
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 585 tacacatacatgatttttggatctataggtttttctcctcagagttatgaagtatcttga 526
Query: 239 gggatagattgaaagattcgtatcttgagggaaattagcatctaggcaaagtgggatcct 298
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 525 gggaaagattgaaagattcgtatcttgagagaaattagcatctaggcaaagtgggatcct 466
Query: 299 gaaaacacgaaagaaaagcattacagaaaaaattagaaggcaataagtaaaggcagccct 358
||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 465 gaaaacatgaaagaaaaacattacaggaaaaattagaaggcaataagtaaaggcagccct 406
Query: 359 tattacaaacatacccaatacatacattcatacatacatacatacacacacacacacata 418
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 405 tattacaaatatacccaatacatacattcatacatacataca--cacacacacacacata 348
Query: 419 catatgcaggtctatacatgtatacatatacacatgtagaa-aaaaagggtccaagaaaa 477
||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||
Sbjct: 347 catatacaggtctatacatgtatacatacacacatgcagaagaaaaagggtccaagaaaa 288
Query: 478 tcataagcatgaaacacatttcagccatagctaccaacagaaaggagggctcattattat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcataagcatgaaacacatttcagccatagctaccaacagaaaggagggctcattattat 228
Query: 538 ctctattttcacacacacgttatcaggcagcagtgaaacagcagctgatagctgccatgg 597
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 227 ctctattttcacacacacattatcaggcagcagtgaaacagcaactgatagctgccatgg 168
Query: 598 a 598
|
Sbjct: 167 a 167
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
