BAC Information

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BAC

Clone NameMSMg01-429D15
Chromosome3 (Build37)
Map Location 10,033,207 - 10,033,752
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041389, LOC667886, Zbtb10, Zfp704, Pag1, LOC621504, Fabp5
Downstream geneLOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429D15.T7 (MSMg01no429_d15.b1)MSMg01-429D15.TJ (MSMg01no429_d15.g1)
ACCAG522005AG522006
length731732
length of high quality
(start - end)
550 (39 - 588)388 (71 - 458)
definitionCHROMAT_FILE: MSMg01no429_d15.b1 PHD_FILE: MSMg01no429_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:38 2005CHROMAT_FILE: MSMg01no429_d15.g1 PHD_FILE: MSMg01no429_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CCGTTATCCTGCCAGGTGTGTCCACTGCTTTCTTCTGGCTGGAGTGCTCG
CTTTCATTTTTTAAGTGTAGTCATTCATAGCTATAGACATCTATCTTTGA
GCTGCTTTTCTATAAAGGTTCTAGGAGTTATTAAATTTCCTGTCTGATTC
GTTGTGGATGCTCTGATCACTGAAGTGTTCATTGCTCAACTTTGTGTCTT
TATGCTATTTTATGCTTTTATTCTATTGTTGTTTGGTATGATTTTTTGAT
ACTTGATTATTGACCTAAGGCAACCTAAACTGGTGGTTTATTTTTGAGAG
TCAGGTGTGGATAAATGCCTTCACTTGCTCAGTGCATCATTTTCTTTCCT
TCATCCCTCCCACAGTCCCCACTGAGGTGAGATCCTGTAAAGAGCATGCG
TTTGGATTTTGTTTTTTAATCCAACCAATTAGTCTGCATTTTTTTTATTG
GTGAGGTAAGGCCATTTGTACTTAGGATTGTAATTAACAGGTATTTGTTG
ATTTTTGTAATTTCCTTCTTTGGTTTCCTCATTGGTTACAATACTGTTTC
TTCTTTTCCTCTATTCCCTAGNCCCATTGTAAGGGTTTGCTGGGTTTACT
GAGTTGGGTTTCTCAGAGCCTCCCCTGATTCTCCTGGTTTGTCTGGTCCT
TTCATGGAAACCATCCTGGTTTTGAACACCC
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTTAGTACCCCATTTTTAATA
GGGTTATTTGGTTCTCTGGATTCTAACTTCTTGACTTCTTTGTATATTTT
GTATATTAGCTCTCTATTGAATGTAGGATTGGTAAAGATCTTTTCCCAAT
CTTTGATTGCCATTTCGTCCTATTGACAGTGTCCTTCGCCTTACAGAATC
TTTGCAATTTTATTGATCAATTCTTGATCTTAGAGCATAGCCATTGGTAT
TCGGTTCAGGAAAATTTTTTTTGTGCCAATGTGTTCAAGGTTCTTTCCCA
CTTTCTCTTCTATTACATTCAGTGTATCTGATTTTAAGTGGAGGTCCTTG
ATCCACTTGGACTTGAGCTTTGTACAAGGAGATAAGAATAGGTCAATTCT
TCTACATGCCAACCATCAGTTGAACTAGCACCATTTGCCAAAAATGCCGC
CTTTTTCCCACTGCATGGTTTTGGTTCCTCTGTCAAAGATCAAGTGACCA
TAGGCGTGTGGGTTCATTTCTGCGCCTTCATTCCTATTCCATCGATCTAC
CTGTTTTGTCTTTGTATCCATTACCCCGCGCCTTTCCTCCCCCATTGCTC
CTGTATTCTTCCCGACCTCTTTTGTCCCTCGACCCTTCCTCAATCTTCTC
TTTTTTTCTTCGCACGTCTTCTTTTCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_d15.b1 MSMg01no429_d15.b1 CHROMAT_FILE:
MSMg01no429_d15.b1 PHD_FILE: MSMg01no429_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:38 2005
         (550 letters)



>mm_chr3_10033003_10033952
          Length = 950

 Score = 1009 bits (522), Expect = 0.0
 Identities = 540/546 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccgttatcctgccaggtgtgtccactgctttcttctggctggagtgctcgct 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccgggatcctgccaggtgtgtccactgctttcttctggctggagtgctcgct 264

                                                                       
Query: 65  ttcattttttaagtgtagtcattcatagctatagacatctatctttgagctgcttttcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcattttttaagtgtagtcattcatagctatagacatctatctttgagctgcttttcta 324

                                                                       
Query: 125 taaaggttctaggagttattaaatttcctgtctgattcgttgtggatgctctgatcactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaggttctaggagttattaaatttcctgtctgattcgttgtggatgctctgatcactg 384

                                                                       
Query: 185 aagtgttcattgctcaactttgtgtctttatgctattttatgcttttattctattgttgt 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagtgttcactgctcaactttgtgtctttatgctattttatgcttttattctattgttgt 444

                                                                       
Query: 245 ttggtatgattttttgatacttgattattgacctaaggcaacctaaactggtggtttatt 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 ttggtatgattttttgatacttgattaatgacctaaggcaacctaaactggtggtttatt 504

                                                                       
Query: 305 tttgagagtcaggtgtggataaatgccttcacttgctcagtgcatcattttctttccttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttgagagtcaggtgtggataaatgccttcacttgctcagtgcatcattttctttccttc 564

                                                                       
Query: 365 atccctcccacagtccccactgaggtgagatcctgtaaagagcatgcgtttggattttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atccctcccacagtccccactgaggtgagatcctgtaaagagcatgcgtttggattttgt 624

                                                                       
Query: 425 tttttaatccaaccaattagtctgcattttttttattggtgaggtaaggccatttgtact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttttaatccaaccaattagtctgcattttttttattggtgaggtaaggccatttgtact 684

                                                                       
Query: 485 taggattgtaattaacaggtatttgttgatttttgtaatttccttctttggtttcctcat 544
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 685 taggattgtaattaacaggcatttgttgatttttgtaatttccttctttggttttctcat 744

                 
Query: 545 tggtta 550
           ||||||
Sbjct: 745 tggtta 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)