Query= MSMg01no429_h24.b1 MSMg01no429_h24.b1 CHROMAT_FILE:
MSMg01no429_h24.b1 PHD_FILE: MSMg01no429_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:00 2005
(516 letters)
>mm_chr3_24108413_24109330
Length = 918
Score = 971 bits (502), Expect = 0.0
Identities = 511/514 (99%), Gaps = 2/514 (0%)
Strand = Plus / Plus
Query: 5 gaattcctggggttcactggctgtgcagcctggtctggtgcaccaatgagaaactagtaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggggttcactggctgtgcagcctggtctggtgcaccaatgagaaactagtaa 264
Query: 65 aaaaataaggggggggg-atgggggagaacaagtgcctaagaagcaacatttaaaaacat 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaataaggggggggggatgggggagaacaagtgcctaagaagcaacatttaaaaacat 324
Query: 124 ttaagactatcacctggcttccacagacacatacactgtacaagatcaccttccaaagga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaagactatcacctggcttccacagacacatacactgtacaagatcaccttccaaagga 384
Query: 184 atgtgccttcccacgcacacacacattgaataatgaaagtgaggtatcccacacacatat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtgccttcccacgcacacacacattgaataatgaaagtgaggtatcccacacacatat 444
Query: 244 acaggagtaagaagggaactccgaaacccaggtgacactgaacgatggtgaaccctttaa 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 acaggagtaagaagggaactccgaaacccaggtgatactgaacgatggtgaaccctttaa 504
Query: 304 ctgtgaacttgggagaaatcaa-aggggatggagacacagaagatggtagatgaagatgg 362
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgtgaacttgggagaaatcaagaggggatggagacacagaagatggtagatgaagatgg 564
Query: 363 ctgtaggatataaatgcactttgaaactttgaataagtaatgaactaaatttatctataa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgtaggatataaatgcactttgaaactttgaataagtaatgaactaaatttatctataa 624
Query: 423 tgttaataaaatgcaaagcaaaatactggtaaggcaaaataattatatcagtgcacatta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgttaataaaatgcaaagcaaaatactggtaaggcaaaataattatatcagtgcacatta 684
Query: 483 aacctggagaaaagtgggggggacaatacaccaa 516
||||||||||||||||||||||||||||||||||
Sbjct: 685 aacctggagaaaagtgggggggacaatacaccaa 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 918
Length adjustment: 10
Effective length of query: 506
Effective length of database: 908
Effective search space: 459448
Effective search space used: 459448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_h24.g1 MSMg01no429_h24.g1 CHROMAT_FILE:
MSMg01no429_h24.g1 PHD_FILE: MSMg01no429_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:00 2005
(381 letters)
>mm_chr3_24233223_24234009
Length = 787
Score = 601 bits (311), Expect = e-176
Identities = 366/387 (94%), Gaps = 6/387 (1%)
Strand = Plus / Minus
Query: 1 ttgtttgtcactgcagcactgggcctgttttgatagctatgagtccagtgtttaaggcta 60
|||||||||| ||||||||| ||||||||||||||||||||||| ||||| |||||| ||
Sbjct: 587 ttgtttgtcattgcagcactaggcctgttttgatagctatgagttcagtgcttaaggtta 528
Query: 61 tattatgtcaagttgaatagtagtggaggaagatacttgaaagtatgaattcttatgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tattatgtcaagttgaatagtagtggaggaagatacttgaaagtatgaattcttatgatg 468
Query: 121 aagtttcttttgattggcccatttctatgagcttac--aca----ctttatcttaagcat 174
|||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 467 aagtttctttagattggcccatttctatgagcttacagacatgatctttatcttaagcat 408
Query: 175 ccttctgtattttggaaagttgtgttcaacaaagtggcgaacatgagacatgagcaggac 234
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 407 ccttctgtattttggaaagttgtgttaaacaaagtggggaacatgagacatgagcaggac 348
Query: 235 aactgtagttatggcagattccagcagaattcatacatttctgcctggtgtataattggc 294
|||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 347 aactatagttatggcagatgccagcagaattcttacatttctgcctggtgtataattggc 288
Query: 295 atatattctgtccacacagttacgctgaggtgtcagctctttaatcccttctcagggcaa 354
||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 287 atatactctgtccacagagttacgctgaggtgtcagctctttaatcccttctcggggcaa 228
Query: 355 tatcaacacactgaccacaataattca 381
| |||||||||||||||||||||||||
Sbjct: 227 tgtcaacacactgaccacaataattca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 787
Length adjustment: 9
Effective length of query: 372
Effective length of database: 778
Effective search space: 289416
Effective search space used: 289416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
