Query= MSMg01no429_j06.b1 MSMg01no429_j06.b1 CHROMAT_FILE:
MSMg01no429_j06.b1 PHD_FILE: MSMg01no429_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:06 2005
(600 letters)
>mm_chr3_142922838_142923837
Length = 1000
Score = 1108 bits (573), Expect = 0.0
Identities = 591/597 (98%), Gaps = 1/597 (0%)
Strand = Plus / Plus
Query: 5 gaattccttgctcacaccctgacttacagataaacccagactgatttctagatcatgttc 64
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttgcacagaccctgacttacagataaacccagactgatttctagatcatgttc 264
Query: 65 cttccgtgatgctgtcagtcacctttggtgttatgagtcagattcttaaaatgcttttgc 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttccgtgatactgtcagtcacctttggtgttatgagtcagattcttaaaatgcttttgc 324
Query: 125 tgagataatagaaaaagagaggactagtgaaatccctctgccagaaaagaagtaaatagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagataatagaaaaagagaggactagtgaaatccctctgccagaaaagaagtaaatagg 384
Query: 185 tcttgcctttctagcaagaggaactaagttttatctccagaacccatatgaacatgggaa 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttgcctttctagcaagagaaactaagttttatctccagaacccatatgaacatgggaa 444
Query: 245 gctggccatttacagattcagtggaatcccaatcaaaatgcctctgacattcttcacaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctggccatttacagattcagtggaatcccaatcaaaatgcctctgacattcttcacaga 504
Query: 305 cataggaaaaa-ctactaaaattcacatagaagcacaaaagaccctggagagcagagcag 363
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cataggaaaaaactactaaaattcacatagaagcacaaaagaccctggagagcagagcag 564
Query: 364 ttctttgcaaaaaggacaatgttggagggaccagtacagcagattttgagctatattata 423
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 ttctttgcaaaaaggacaatgttggagggactagtacagcagattttgagctatattata 624
Query: 424 gaactataataataaaaacatcatggtcctctccccaaaacagagttgtcgatcagggaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaactataataataaaaacatcatggtcctctccccaaaacagagttgtcgatcagggaa 684
Query: 484 gcaaaataaaagacttaaacatgaatgcacataattgcaaccatctgatatttggcaaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcaaaataaaagacttaaacatgaatgcacataattgcaaccatctgatatttggcaaag 744
Query: 544 atgccaaaaagagcacactggagaaaggatagcatcttcaacaaatggcacttggaa 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atgccaaaaagagcacactggagaaaggatagcatcttcaacaaatggcacttggaa 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_j06.g1 MSMg01no429_j06.g1 CHROMAT_FILE:
MSMg01no429_j06.g1 PHD_FILE: MSMg01no429_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:07 2005
(392 letters)
>mm_chr3_143040105_143040893
Length = 789
Score = 704 bits (364), Expect = 0.0
Identities = 384/392 (97%), Gaps = 3/392 (0%)
Strand = Plus / Minus
Query: 1 caaggcatcttactgccgaggaagtccagtgaggcacatgtatggcgccaccccgtttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 caaggcatcttactgccgaggaagtccagtgaggcacatgtatggcgccaccccgtttca 530
Query: 61 cagatagatggtatgcattcctgttggcccctgtcccttgggatagaatgagccttgtat 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cagatagatggtgtgcattcctgttggcccctgtcccttgggatagaatgagccttgtat 470
Query: 121 ggagaggtcagtgctatggcagaaactagaacttcatctctgcatctgcagttccaagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ggagaggtcagtgctatggcagaaactagaacttcatctctgcatctgcagttccaagtg 410
Query: 181 ccaagctctgagtcactgctgccctctcaccacttcctataagatgtgacggcatagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ccaagctctgagtcactgctgccctctcaccacttcctataagatgtgacggcatagaag 350
Query: 241 gccaccagtctgtccccgtttgcattgtctgcttgttgaattttgtacaaatgggaaggt 300
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 349 g---ccagtctgtccccgtttgcattgtctgcttgtttaattttgtacaaatgggaaggt 293
Query: 301 gttggcctgacttggctgtattatcgatccacatcctaacctgcttgtgctgaccagggc 360
|||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct: 292 gttggcctgacttggctgcattagcgatccacatcctaacctgcttgtgctgactagggc 233
Query: 361 cccactgcagtatctctttcctatagtcttca 392
||||||||||||||||||||||||||||||||
Sbjct: 232 cccactgcagtatctctttcctatagtcttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 789
Length adjustment: 9
Effective length of query: 383
Effective length of database: 780
Effective search space: 298740
Effective search space used: 298740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
