Query= MSMg01no429_o05.b1 MSMg01no429_o05.b1 CHROMAT_FILE:
MSMg01no429_o05.b1 PHD_FILE: MSMg01no429_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:30 2005
(521 letters)
>mm_chr3_45035190_45036110
Length = 921
Score = 984 bits (509), Expect = 0.0
Identities = 518/521 (99%)
Strand = Plus / Minus
Query: 1 attatttcctatataaatttggctctgtaatatgtttgttaattttactactgctgtatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 attatttcctatataaatttggctctgtaatatgtttgttaattttactactgctgtatt 662
Query: 61 taaaagcatgtatttgtttttaactaaggcttgccaaaagcaattaaatacatccagagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 taaaagcatgtatttgtttttaactaaggcttgccaaaagcaattaaatacatccagagt 602
Query: 121 ggagttgtatatctcataattgtttaatgcaccgtgagtgtttaatcaaagctctcagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ggagttgtatatctcataattgtttaatgcaccgtgagtgtttaatcaaagctctcagta 542
Query: 181 tgccagcatcttaatggaaacaattactgatgtgtaaagaagctaaagtaactgtattga 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 541 tgccagcatcttaatggaaacaattactgatgtgtaaagaagctaaagtgactgtattga 482
Query: 241 tatgaaccataatattgtagagttctatcttaaggaaagacagttaatctaactcttttc 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tatgaaccataagattgtagagttctatcttaaggaaagacagttaatctaactcttttc 422
Query: 301 taaaaaaatatattttttttgtctctccatgacatgcttaggaaggtttctgagtgtatt 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaaaaaatattttttttttgtctctccatgacatgcttaggaaggtttctgagtgtatt 362
Query: 361 ttaaatacactgactagtccatcagaattgaagaagtgctctaaatttgaagccttgttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaaatacactgactagtccatcagaattgaagaagtgctctaaatttgaagccttgttt 302
Query: 421 tctccagatttcttctttatattcatcccctttccatgaaaggacagagataagtcacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tctccagatttcttctttatattcatcccctttccatgaaaggacagagataagtcacac 242
Query: 481 aaaactgccaaggagacaaggacactacttcccttgtctca 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaactgccaaggagacaaggacactacttcccttgtctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_o05.g1 MSMg01no429_o05.g1 CHROMAT_FILE:
MSMg01no429_o05.g1 PHD_FILE: MSMg01no429_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:30 2005
(566 letters)
>mm_chr3_44899222_44900188
Length = 967
Score = 973 bits (503), Expect = 0.0
Identities = 544/567 (95%), Gaps = 16/567 (2%)
Strand = Plus / Plus
Query: 1 tgttccctccaatataaaaaggagacaatgaatgcagaacttcctcaaaattaaaggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttccctccaatataaaaaggagacaatgaatgcagaacttcctcaaaattaaaggaaa 260
Query: 61 aaagtgatagacaggagaatctaaagcagtatccaatgaccatctagtcaaaaatatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtgatagacaggagaatctaaagcagtatccaatgaccatctagtcaaaaatatatt 320
Query: 121 tggagacagtttgcaaaatatatttttaagaaaaaaatgaatcacaactagaatttttt- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggagacagtttgcaaaatatatttttaagaaaaaaatgaatcacaactagaattttttt 380
Query: 180 atcaatatggaatattgataaaatataatcacaaggaaaatatcttttgagaaaatagta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaatatggaatattgataaaatataatcacaaggaaaatatcttttgagaaaatagta 440
Query: 240 ccaccaaactttctgttctttcaaaatgtaatgttaaaagtgaaaaaataagattagagt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaccaaactttctgttctttcaaaatgtaatgttaaaagtgaaaaaataagattagagt 500
Query: 300 cgtgacaatgctaagacttttaagaatattgctcataaaaatattataaggtgatggccc 359
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 cttgacaatgctaagacttttaagaatattgatcataaaaatattataaggtgatggccc 560
Query: 360 tcatgagcgtgttgctgtaaatggtattccacacatgactgcccttctgaatgacatgtt 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 tcatgagcgtgttgctgtaaatggtattccccacatgactgcccttctgaatgacatgtt 620
Query: 420 tcactggaacacttgtatgacaggaagtcaatatagtgtggaagctaattgggaatgtca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcactggaacacttgtatgacaggaagtcaatatagtgtggaagctaattgggaatgtca 680
Query: 480 acttatcttgcaagagctctgtgactatggctgggccaacaattattcccagctttagtt 539
||| ||||||||||| |||||||||||| || ||| ||||||||||
Sbjct: 681 act---------------ctgtgactatgtctgggccaacaagtactcctagctttagtt 725
Query: 540 acatatgtataaatggatagttaagag 566
|||||||||||||||||||||||||||
Sbjct: 726 acatatgtataaatggatagttaagag 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space: 532092
Effective search space used: 532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
