BAC Information

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BAC

Clone NameMSMg01-429P01
Chromosome3 (Build37)
Map Location 142,857,160 - 142,857,638
singlet/doubletsinglet
Overlap genenone
Upstream genePdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952, Lmo4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429P01.T7 (MSMg01no429_p01.b1)MSMg01-429P01.TJ (MSMg01no429_p01.g1)
ACCAG522551AG522552
length748717
length of high quality
(start - end)		609 (34 - 642)479 (76 - 554)
definitionCHROMAT_FILE: MSMg01no429_p01.b1 PHD_FILE: MSMg01no429_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:34 2005CHROMAT_FILE: MSMg01no429_p01.g1 PHD_FILE: MSMg01no429_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTCTTT
TTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTTTGTAT
CTATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTA
TAAACAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGTT
GGGACATCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAG
TACTATGTCCAATTTTCTGAGGAACCGCCATACTGATTTCCAGAGTGGTT
GTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCA
CATCCTTGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCT
GACTGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTCTCTGA
TGATTAAGGATGTTGAACATTTTTTCAGGTGTTTCTCTGCCATTCGGTAT
TCCTCGGGTGAGAATTCTTTGTTCAGCTCTGAGCCCCATCTTTTAAAGGG
GCTATTTGATTTTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGG
ATATTAGTCCCCTATCTGATTTAAGATAGGTAAAGATCGTTTTCCAATCT
GTTGGTGCCTTTTTGTCTTATTGACGGTGTCTTTTTGCCTTTGCAAAACT
TTGCANGTTCCTGAGGTCCCATTTGCCATTCCTCGATCTTACCGCCCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCTGGTAAGAACTCTACTGAAATT
GCCCCCAAATTTGTAACATGTGGTTCACTAGGCTTATTTTAAGAAACCCA
AATCTTTAGAAATATTATTTTGTTATGAATTAATGTTCCCTTTACTTTCT
CTTGCCATGACAAATACCATGGTCAAAAGGAACTTGGAGGATGAAAGGGT
TGATTTCAGCATTTATGCCACAGGCGATTGTTGAGGACAGTCAGGTAGGA
ACACAAGTGAGAACTTAAAGCACAAAGGATTGGTGCTTGCTGGTTCACTC
AGGAGAGTTTTCTTATTCAACCCTGAACTCCTGCCTAGGGAATGGTGCCA
CCCACAATTAAATGACCCCCACCATATAAACTTGTAATCAACACAATCCA
CACAGATGTTCCCACAGGCCAATTTGTGTAGATAGTTTGTCAGTTTAGAC
TCCCTTCTCAAATGAATCTAGGCAATGTCAAGTTGGCAATTAAAGTTCTC
TAGAACTGTTAAGGAATGCCTCTCTTTTTAAAAAGATGCATTGAGCTCTA
GTGTTTGGTACCCCAGGCTGTATTCTCACTTGGAGATAGGTTGATTAAAT
TGCAGTTGGTGAAGTTGATGCTGCCACACCTTTAGGCTCTAATAAAAACA
CCCCCAGTTTCTTGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_p01.g1 MSMg01no429_p01.g1 CHROMAT_FILE:
MSMg01no429_p01.g1 PHD_FILE: MSMg01no429_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:34 2005
         (479 letters)



>mm_chr3_142856960_142857838
          Length = 879

 Score =  911 bits (471), Expect = 0.0
 Identities = 477/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctggtaagaactctactgaaattgcccccaaatttgtaacatgtggttcactaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctggtaagaactctactgaaattgcccccaaatttgtaacatgtggttcactaggctt 260

                                                                       
Query: 61  attttaagaaacccaaatctttagaaatattattttgttatgaattaatgttccctttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttaagaaacccaaatctttagaaatattattttgttatgaattaatgttccctttac 320

                                                                       
Query: 121 tttctcttgccatgacaaataccatggtcaaaaggaacttggaggatgaaagggttgatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctcttgccatgacaaataccatggtcaaaaggaacttggaggatgaaagggttgatt 380

                                                                       
Query: 181 tcagcatttatgccacaggcgattgttgaggacagtcaggtaggaacacaagtgagaact 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tcagcatttatgccacaggcgattgttgaggaccgtcaggtaggaacacaagtgagaact 440

                                                                       
Query: 241 taaagcacaaaggattggtgcttgctggttcactcaggagagttttcttattcaaccctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 taaagcacaaaggattggtgcttgctggttcactcaggagagttttcttatacaaccctg 500

                                                                       
Query: 301 aactcctgcctagggaatggtgccacccacaattaaatgacccccaccatataaacttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactcctgcctagggaatggtgccacccacaattaaatgacccccaccatataaacttgt 560

                                                                       
Query: 361 aatcaacacaatccacacagatgttcccacaggccaatttgtgtagatagtttgtcagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcaacacaatccacacagatgttcccacaggccaatttgtgtagatagtttgtcagtt 620

                                                                      
Query: 421 tagactcccttctcaaatgaatctaggcaatgtcaagttggcaattaaagttctctaga 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagactcccttctcaaatgaatctaggcaatgtcaagttggcaattaaagttctctaga 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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