BAC Information

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BAC

Clone NameMSMg01-430G11
Chromosome3 (Build37)
Map Location 157,671,601 - 157,672,008
singlet/doubletsinglet
Overlap genenone
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c
Downstream geneSfrs11, Lrrc40, Lrrc7, LOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430G11.T7 (MSMg01no430_g11.b1)MSMg01-430G11.TJ (MSMg01no430_g11.g1)
ACCAG522906AG522907
length797798
length of high quality
(start - end)
408 (72 - 479)77 (84 - 160)
definitionCHROMAT_FILE: MSMg01no430_g11.b1 PHD_FILE: MSMg01no430_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:14 2005CHROMAT_FILE: MSMg01no430_g11.g1 PHD_FILE: MSMg01no430_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACCATCCTGCCAACGACACCCTTTAGATAAATAAGTGGGAC
TATACTATTGATATATCAAGCTTTAAAGCCATATTCACTTGAAAAACATT
AAAGCCTGAATGACTGGCAAGTAAGAAGCTGACTTGACTATAAATGCATA
TAGGCTTACAAGTGCAGAGGGTATAGCAAAGAGGTTAGAAGTGCTGATCA
GAGCAAGCTGAAAGGAGCATCTTTGTTTTTACCTAAAGCTAGCCCCCTTG
GGTGCAGTGAAATCTAGAACTTGCTTTTATACTGGGAAACTTGTGACAGC
TAATGCCTGTTTGTGGCATGAAATGTTTACATAAACCTACAGCTTCACAG
TATCAAAATAGAGCATTTCTACTGTCCATTTCTCTCTTGGCAAATTTCAC
TGTTGTCTGCAAAATAGGAACACCTCCCCGTCGCCCCACCACCATCATTC
ATAGATCCAGATTTCTGTCTGCTATACACTTACCGGAAAGCGTTTAGCTC
CCCTTTCTCATTCTCCTCCCCCACTATTTATGCCCTCTTAAATGTTCCCT
CCTGTATCCCCCACCCCACCTATTTCTTATTATTTCCGCTTTTTTTACCC
CTTTCCCCCTTTTTTCTCGCTGCTTTTTCCCTTCCCCCACCCCTTTTCTT
TCTTTTCCCCTTTTATCCCCCATATATCCACATACCCTTCTTCCCCTTCC
CTTAGTTTTCCCTTTTTTTTATTCCATTTTTCTCCCCCCACCCCTCN
TGGCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCGGACATTCAGGACTACAGGGT
TATATAGAGACCCTGTTTCAAAATATAAGGGGTAGGAGAGAGAGAGAGAG
AGAGAGAGCGCTACTCTTCCCCTCGCCGCCGTGCCTCTGTTCTCCTCTCG
CCTGCCCTGCCCCCCCTCTTCCCTGGCCCTCGCTTTCTCTCCCTCCCTGC
CCCTCTTTTTGTCGCTCACTCCTCGTGCTTGTCCTTCCCCCCCCCCGTCC
CCTTTCCCGTGCCCGCCCCCCTTTTTTTTTTTCCGGCCCCGCGCCCCCCC
CCCGCGCCGGTCACTCTCCCCCCCCCCTCCCCCACCCTCCGCCCCCCGCC
CCCTCCTCCCCCTCTTCCCCCCCCCCCCTCCTGCCCTCCTTCCCTCCTCC
TCCCTCCCCTCCTCCCCCCCTCTTCTTCCCCCCCCCCCCTCCCTTCCCCC
CCTCCCCTCTTCCCCCCCTCCCCTCTCCCCCCCCCTCCCCCTCCCCCCCC
CCCCCCCCCCTCTCCCTCTTTTCCCCCCTCTCCTCCTCCCCTCCTTTCCC
CCCCCCTTTTCCCCCTCCCTGTTCTCTCTCCCCTTCCTCCTCCCTCCCTT
CCCTCCCCCCGCCCCTCCCTCCCCCCCCTCCCCTCCTTCTCCTTCCCTCC
CCCCCTCCGCTTGCCCTCCCCCCCCCTCCCCCCCTCCTCCTTCCTCCTCC
TCCCCCTGCCCTCCTTCTTCCTTTCCCCCCCCCTCCTCCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_g11.b1 MSMg01no430_g11.b1 CHROMAT_FILE:
MSMg01no430_g11.b1 PHD_FILE: MSMg01no430_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:14 2005
         (408 letters)



>mm_chr3_157671401_157672208
          Length = 808

 Score =  750 bits (388), Expect = 0.0
 Identities = 403/408 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgacaccctttagataaataagtgggactatactattgatatatcaagctttaaagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 acgacaccctttagataaataagtgggactatactattgatatatcaagctttaaagcca 549

                                                                       
Query: 61  tattcacttgaaaaacattaaagcctgaatgactggcaagtaagaagctgacttgactat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tattcacttgaaaaacattaaagcctgaatgactggcaagtaagaagctgacttgactat 489

                                                                       
Query: 121 aaatgcatataggcttacaagtgcagagggtatagcaaagaggttagaagtgctgatcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaatgcatataggcttacaagtgcagagggtatagcaaagaggttagaagtgctgatcag 429

                                                                       
Query: 181 agcaagctgaaaggagcatctttgtttttacctaaagctagcccccttgggtgcagtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agcaagctgaaaggagcatctttgtttttacctaaagctagcccccttgggtgcagtgaa 369

                                                                       
Query: 241 atctagaacttgcttttatactgggaaacttgtgacagctaatgcctgtttgtggcatga 300
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atctagaacttgctggcatactgggaaacttgtgacagctaatgcctgtttgtggcatga 309

                                                                       
Query: 301 aatgtttacataaacctacagcttcacagtatcaaaatagagcatttctactgtccattt 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aatgtttatataaacctacagcttcacagtatcaaaatagagcatttctactgtccattt 249

                                                           
Query: 361 ctctcttggcaaatttcactgttgtctgcaaaataggaacacctcccc 408
           |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 248 ctctcttggcaaatttcactgttgtctgcaaaataggaccacctcccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)