Query= MSMg01no430_k14.b1 MSMg01no430_k14.b1 CHROMAT_FILE:
MSMg01no430_k14.b1 PHD_FILE: MSMg01no430_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:37 2005
(499 letters)
>mm_chr3_76810055_76810953
Length = 899
Score = 911 bits (471), Expect = 0.0
Identities = 489/495 (98%)
Strand = Plus / Minus
Query: 5 gaattcaaatcttgccctatgaaatcattataccacagagcatattttcatctcttgcca 64
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gaattcaaatcatggcctatgaaatcattataccacagagcatattttcatctcttgcca 803
Query: 65 caagttaccacctgctgtgtccagttcttctcaagcaccctagttgtcaatttactttga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 caagttaccacctgctgtgtccagttcttctcaagcaccctagttgtcaatttactttga 743
Query: 125 tcatattaattattctaaattttaaattaaaatttaaaataatctcacgattctatacat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tcatattaattattctaaattttaaattaaaatttaaaataatctcacgattctatacat 683
Query: 185 tttctaaatatctatttagttatagagtcccaaattaatattcataaaaccataaaatca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tttctaaatatctatttagttatagagtcccaaattaatattcataaaaccataaaatca 623
Query: 245 tgtgttcattcagaattatgaacttataattaattatgagttgtaattaatataactcct 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgtgttcattcagaattatgaatttataattaattatgagttgtaattaatataactcct 563
Query: 305 gatgtctgtattccagatgaggagtcatacagttcatataaataaagtaaatccttatct 364
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 562 gatgtctgtattccagatgaggagtcatacagttcatataagtaaagtcaatccttatct 503
Query: 365 agatgaggaaattttactagcctctgggaagtaattttattccaaaatatcttttctaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agatgaggaaattttactagcctctgggaagtaattttattccaaaatatcttttctaaa 443
Query: 425 accgatatgtgaaatcacttttactagagatcaatctctaaacccaacaagaaataaagc 484
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 442 accgatatgtgaaatcacttttactagagatcaatctctaaacccaacgagaaataaagc 383
Query: 485 ttcaaatatctcctt 499
|||||||||||||||
Sbjct: 382 ttcaaatatctcctt 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no430_k14.g1 MSMg01no430_k14.g1 CHROMAT_FILE:
MSMg01no430_k14.g1 PHD_FILE: MSMg01no430_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:37 2005
(376 letters)
>mm_chr3_76652979_76653755
Length = 777
Score = 596 bits (308), Expect = e-174
Identities = 353/368 (95%), Gaps = 3/368 (0%)
Strand = Plus / Plus
Query: 1 ataccttgtataagtcaatagcttagagccactggcctgctttatctttctgctcaaagt 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataccttgtataaatcaatagcttagagccactggcctgctttatctttctgctcaaagt 260
Query: 61 gtttaaggaagcaacccatcctggtgccatgactagaaatggaaaagaaatatgtaatca 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttaaggaagcaacccatccaggtgccatgactagaaatggaaaagaaatatgtaatca 320
Query: 121 tta-tgagtcactacagcaacaccaaattatgaatattatgagtttatt-ctaccattat 178
||| | |||||||| ||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct: 321 ttaat-agtcactatagcaacaccaaattatgaatattatgactttctttctaccattat 379
Query: 179 ctctccttcctttactttcttccctatttctctttgattctttcttaatgtatcctcctt 238
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 ctctccttcctttactttcttccctctttctctttgattctttcttaatgtatcctcctt 439
Query: 239 tcctacagtggtttaaataagaacagcacccataagttccaatatttaaatgcttggtca 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 tcctacagtggtttaaataagaacagcacccataagttctaatatttaaatgcttggtca 499
Query: 299 ccagagggtatcactgttcacaaggatcaggaatattagtatttgtattcatattaatat 358
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 ccagagagtaggactgttcacaaggatcaggaatattagtatttgtattcatattcatat 559
Query: 359 tcatattt 366
|| |||||
Sbjct: 560 tcgtattt 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 777
Length adjustment: 9
Effective length of query: 367
Effective length of database: 768
Effective search space: 281856
Effective search space used: 281856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
