BAC Information

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BAC

Clone NameMSMg01-430K23
Chromosome3 (Build37)
Map Location 63,109,686 - 63,110,094
singlet/doubletsinglet
Overlap geneMme
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430K23.T7 (MSMg01no430_k23.b1)MSMg01-430K23.TJ (MSMg01no430_k23.g1)
ACCAG523120AG523121
length784797
length of high quality
(start - end)		416 (44 - 459)377 (78 - 454)
definitionCHROMAT_FILE: MSMg01no430_k23.b1 PHD_FILE: MSMg01no430_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:39 2005CHROMAT_FILE: MSMg01no430_k23.g1 PHD_FILE: MSMg01no430_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGATGTATATTTGCGGCGCTATACGACTCCTATATTTCGAGGATCCGCGG
AATTCACATTCTGATTTCATTATCATTTTTGTATGTCTTGACCTACAACC
TTGAAGCAAAATGAGTATTCCAATATGTGGTCATTTTTATAAATGCCAGA
TGGTGATAGTGCCCCAGGTGAAGTACCTTAGCACTAACTCACCTCTGGCA
GCAACAGGGCATCTCTGTTCCCTAAAGACCTTTGTCTCTGCCATCTGCCC
ATTATCACAGTAAATACTCCATGCAGAGAAATGGGGAAGTACACAAATAC
AGGAAGGACTGTAAGCCGAGTCTTAGAGTTTGCAAGCCTTATACCAAGCT
TCTAGAGCAGATGAGGCTGTTTTCCTATATGTTTGGAAAAAAATCATCAA
GCAGTCAAGTGCACAGACCATGCCATGGAGAAAGGACCACTAAAGCAGGC
CTTTGTTGGTTTCAGTGTACCATGCAGAAACTTACTTTCAGGGGCTTCCT
TGATATATATAGTACTGAACGCTTTTGTCCTCCTTCCAATTTACCAATTA
CCATTTATCTTCCAATCCTTTTTAAAAAGGGAAGCTTTTCCCCCTTTTTC
CCTTAAACTTTTTTTTTTCCTCTTGGGTTAATTTAATAACTCTTGTTTCT
TCACTCTTTTCTTGTTTTTTCCCGTCATCTTCTTTCCCCACTTCTATTTT
CTCTTTTCCCTTTTTTCTCCTTGTGCCCTTCCTTTCTTCTCTCCTTTATT
CCCCCTTTTTTTTCAATTTGCCTCCCTTAACTCG

CCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATT
TTTAAATAGGGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAATTCTTTG
TTTATGTTAGATACCATTCTTTTATCAGATGTAGGATTCATAAAGATCTT
TTCCCAATCTGTGGGTGGACATTTGGTCTTATTGACAGTGTCCTTTGCCT
TATAGAAGTATTTCAATTTTATGAGGTCCCATTTTTTGATTGTTGATCTT
AGAACATAAGCCATTGATGCTGTGTTCAGGAAAGTTTCCCTTGTGTCTGT
GTTCATAGATTTCCCCCACTTTCTCTTCTATTAAATTCAGTGTATCTAGT
TTTATGTGGAGGTCCGTGATCCACTTGGACTTGAGCTTTATATTAGGAGA
TAAGAATGGATCAATTTACCATACATATTTTAAGACGATTTTTTTTTAAA
AGATGGATTATTTTGCCCTTTTTCTAATGGCCCACCGCTGTGTTGACCCA
TACCCTTTCTGTTGATAAGATGCGCACTTTCCCCCCCCCGATTGTTCCCT
TCCCTTTTGCTAACCCTTATTGGACCTCTTACGTCGGCGCTCCCTTTGTA
TGTCTTTGATTTTCCTTGCTTTCTTTTATGCTGTATACTTTCTCCCCCCA
CTGGATTTATTCTTGTACCCCCATTCTCTGCGCTCTCTCTCATTCTTTAA
TCCATATATCCTTTTTACTCTTCTTCTCGTAATATCTGGTTATCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_k23.b1 MSMg01no430_k23.b1 CHROMAT_FILE:
MSMg01no430_k23.b1 PHD_FILE: MSMg01no430_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:39 2005
         (416 letters)



>mm_chr3_63109480_63110294
          Length = 815

 Score =  731 bits (378), Expect = 0.0
 Identities = 402/410 (98%), Gaps = 1/410 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcacattctgatttcattatcatttttgtatgtcttgacctacaaccttgaagcaa 66
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 207 gaattcacattctgatttaattatcatttttgtatgccttgacctacaaccttgaagcaa 266

                                                                       
Query: 67  aatgagtattccaatatgtggtcatttttataaatgccagatggtgatagtgccccaggt 126
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 267 aatgagtattccaatatgtggtcatttttataaatgccagatggtggtagtgccccaggt 326

                                                                       
Query: 127 gaagtaccttagcactaactcacctctggcagcaacagggcatctctgttccctaaagac 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gaagtaccttagcactaactcacctctggcagcaacagggcatctctgttccctaaagac 386

                                                                       
Query: 187 ctttgtctctgccatctgcccattatcacagtaaatactccatgcagagaaatggggaag 246
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cttagtctctgccatctgcccattatcacagtaaatactccatgcagagaaatggggaag 446

                                                                       
Query: 247 tacacaaatacaggaaggactgtaagccgagtcttagagtttgcaagccttataccaagc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tacacaaatacaggaaggactgtaagccgagtcttagagtttgcaagccttataccaagc 506

                                                                       
Query: 307 ttctagagcagatgaggctgttttcctatatgtttggaaaaaaatcatcaagcagtcaag 366
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 507 ttctagagcagatgaggctgttttcctatatgtttggaaaaaa-tcatcaagcagtcaag 565

                                                             
Query: 367 tgcacagaccatgccatggagaaaggaccactaaagcaggcctttgttgg 416
           | |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 566 tacacagaccgtgccttggagaaaggaccactaaagcaggcctttgttgg 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 815
Length adjustment: 9
Effective length of query: 407
Effective length of database: 806
Effective search space:   328042
Effective search space used:   328042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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