BAC Information

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BAC

Clone NameMSMg01-430L02
Chromosome3 (Build37)
Map Location 123,718,169 - 123,718,438
singlet/doubletsinglet
Overlap genenone
Upstream geneMyoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430L02.T7 (MSMg01no430_l02.b1)MSMg01-430L02.TJ (MSMg01no430_l02.g1)
ACCAG523126AG523127
length796826
length of high quality
(start - end)
---270 (80 - 349)
definitionCHROMAT_FILE: MSMg01no430_l02.b1 PHD_FILE: MSMg01no430_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:40 2005CHROMAT_FILE: MSMg01no430_l02.g1 PHD_FILE: MSMg01no430_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTTGTGGTCGCTAAACGACTCACTATTTTCCAGAGGATC
CGCGGAATTCATTGATTTTGCCACATATAACGAGATTCCATGATGCTATG
TAGTGATGATGCTTTAGTTAATATTGAGATCCTCTCTGTTTATTTCTGAT
ATTACTTATCTCCATTTTCATATTAATGTTACTGACTGTGTTGATATTTT
ACCCATTACTTCTTGAATGATAGGCCAGCTACTTATCTATGGAGAATTTA
GTTCCAGATACACTTTAAGTGTCTCGTTTGACATAGATTTCCATTTAGAT
TAAAAAAACAAGCATGAATTCTCTCCTTATTCCTGCTTTACCTTGTGCTT
GTGATCTTCATGAGTGCGTTTCACTAGTAGCTATACCTATAAAAATGCAC
ATACCTGTCATGCTCCCTTCCTTATTTTACCCTGCCAAATAAACTAAATT
AAACTTTACCATCACTGTGATCCTTGTCTTGAACACCTTATTTTTACTAT
CCATTTCCCTTATATTCATTTCTCCTTTGTCTCCCCGCTTCTTTTTTCTT
TTTTTCTCTCTTCCTTCTTCGCTCCCCTCCCCTTCTTTTTATTCTCTCTT
TTCCTCTTTCTCTTCCCTTTTTTCTTTCCTATCTTCTCTCTCTTCTTCCT
TTCACTCTCTTCCCTATTTTTTTCTTTCTCTCTTTTTTTTTTTCCCTTTA
TTTCTTTCCTATTTCCTTTTCTCACTCTTCCCTTTTCCTCTTTTTATTTC
TATTTTTATTTTATCTTTTTTATCTTATTTACTCTTCCTCCTTTTC
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTTGGTTTTCATGATTGT
GAATTTTCCAAATTTCTTCGAGTTACCAATTTGTATGTCAGTTTTTAAAA
ACGATTCCCATGATCTGATGTAAGCTTTAATTATCAATTATCTGTTAGTG
CTTCAAATGAATATATATTCTGTGAATGTCTGTATCGTGAGGCCAATTTA
GTGTTAGCTAGAGCTCGGGGGTTGAGCAGACTATCTCCCTAACATGTGCA
ACATTCTGTGTTAAACCCCAACACTGAATAAAGAAAGAAGGAAGTGAAAA
GGTAGGAAGGAAGAAAGAAAGGAAGGACAGAATGACAGATGGAAGTACGA
TAACACTGTACGACACGCTCCTCTTTCACTCGGCATATTCGTCTCCTGCT
TTACTACTGCCTTTCTTTCTTATTTCTCTATCCCCTACATCCCTTCTTTC
CTCTCCCTACCTCCATATCTTCTTCTCCCTTTCCCCCCCCTCTTCTCCCT
ATTTCCCCACTCTCTCTTTATTTCTTTCCTTTCCTCCTCTTCTTCCTCCC
CCTCCTCTCTTTGTTCCTCCCTTATCCTTAACCCTCACCTTCCTTCCTTT
CAACCCTATACTCCTTTCCCTTCCTTCCCTCCCATTTCCTCCTCTCCTTC
CTCCTTTCCTTACCCCCCTTTCCACTTTTCTCCCCTTTTTCCTTTCTCCC
TTTCTTTATTCCTCCCCTTCCCCTTCCTCCCTCCTTTCCCTACTTCTCCT
TTTTTCTCTCTTTCCTTCTCTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_l02.g1 MSMg01no430_l02.g1 CHROMAT_FILE:
MSMg01no430_l02.g1 PHD_FILE: MSMg01no430_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:40 2005
         (270 letters)



>mm_chr3_123717969_123718638
          Length = 670

 Score =  514 bits (266), Expect = e-150
 Identities = 269/270 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttttggttttcatgattgtgaattttccaaatttcttcgagttaccaatttgtatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttttggttttcatgattgtgaattttccaaatttcttcgagttaccaatttgtatgtc 260

                                                                       
Query: 61  agtttttaaaaacgattcccatgatctgatgtaagctttaattatcaattatctgttagt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttttaaaaaagattcccatgatctgatgtaagctttaattatcaattatctgttagt 320

                                                                       
Query: 121 gcttcaaatgaatatatattctgtgaatgtctgtatcgtgaggccaatttagtgttagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcaaatgaatatatattctgtgaatgtctgtatcgtgaggccaatttagtgttagct 380

                                                                       
Query: 181 agagctcgggggttgagcagactatctccctaacatgtgcaacattctgtgttaaacccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagctcgggggttgagcagactatctccctaacatgtgcaacattctgtgttaaacccc 440

                                         
Query: 241 aacactgaataaagaaagaaggaagtgaaa 270
           ||||||||||||||||||||||||||||||
Sbjct: 441 aacactgaataaagaaagaaggaagtgaaa 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)